Activity
From 04 Mar 2013 to 02 Apr 2013
02 Apr 2013
- 17:33 Documentation #224 (Resolved): shut down overnight Doxygen update
- - crontab entry disabled
- Doxygen and OpenGrok are now run by git post-receive hook
- TeamCity seems to depend on ... - 15:40 Bug #245 (Resolved): inconsistent fact 2*PI in FormFactorHemiSpheroid
- 15:40 Bug #245 (Sprint): inconsistent fact 2*PI in FormFactorHemiSpheroid
- 15:40 Bug #245 (Backlog): inconsistent fact 2*PI in FormFactorHemiSpheroid
30 Mar 2013
- 13:17 Refactoring #233 (Resolved): Simplify Geometry classes
- Transforms are now methods of Transform3D instead of BasicVector3D.
This allows for meaningful inheritance Transform... - 13:12 Refactoring #233 (Sprint): Simplify Geometry classes
- 13:11 Refactoring #233 (Backlog): Simplify Geometry classes
29 Mar 2013
- 00:45 Bug #249 (Resolved): FunctionalTests: fitting from python works two times faster than fitting fro...
- 00:44 Refactoring #248 (Archived): PythonAPI: redesing Py++ boost::python API code generation and insta...
- * find the reason of huge memory consumption during automatic boost python code generation (pygccxml)
- 00:43 Testing #228 (Resolved): Add mesocrystal test in Functional TestCor and TestPyCore
- 00:43 Testing #228: Add mesocrystal test in Functional TestCor and TestPyCore
- This is new C++/python test which reproduce simulation of Elizabeth's sample, partly repeating ./App/TestMesocrystal2...
- 15:46 Testing #228: Add mesocrystal test in Functional TestCor and TestPyCore
- In the view of heavy refactoring of geometric classes, lead by Joachim, as well as possible migration to shared point...
- 00:40 Bug #229 (Resolved): PythonAPI: provide Py++ code generation under Linux
- 00:39 Bug #229: PythonAPI: provide Py++ code generation under Linux
- Technically it is done. But in fact, due to large memory consumption of python+gccxml, will work only on powerfull PC...
- 18:13 Bug #229 (Sprint): PythonAPI: provide Py++ code generation under Linux
- 00:37 Bug #247 (Resolved): PythonAPI: kvector algebra dissapeared from python
- 20:07 Bug #247 (Sprint): PythonAPI: kvector algebra dissapeared from python
- 20:07 Bug #247 (Archived): PythonAPI: kvector algebra dissapeared from python
- 08:46 Feature #218 (Resolved): Provide python example of fitting using external ROOT
- 08:46 Feature #218: Provide python example of fitting using external ROOT
- It is done, at last. Two new functional tests, TestFit01 and TestFit02, are implemented in C++ and python and are the...
28 Mar 2013
- 11:01 Bug #246 (Resolved): PythonAPI: resolve bug with 32bit pointer type generated by Py++
- 11:00 Bug #246: PythonAPI: resolve bug with 32bit pointer type generated by Py++
- The problem:
To provide extended fitting from python we have to derive Python classes from C++'s ISampleBuilder. The...
27 Mar 2013
- 22:24 Bug #246 (Sprint): PythonAPI: resolve bug with 32bit pointer type generated by Py++
- 22:23 Bug #246 (Archived): PythonAPI: resolve bug with 32bit pointer type generated by Py++
- 10:16 Refactoring #234: avoid templates - e.g. in integration wrapper MemberFunctionIntegrator.h
- Another remark, is that apart of technicalities, Integrator redesign is not the most urgent task. It does his job, fo...
26 Mar 2013
- 10:34 Bug #245 (Archived): inconsistent fact 2*PI in FormFactorHemiSpheroid
- I guess the factor should apply to both real and imaginary parts, or to none.
25 Mar 2013
- 19:58 Bug #243 (Rejected): App/App produces tons of warnings
- I deleted all Makefiles (in all subdirectories of BornAgain),
then I repeated qmake; make,
and the warnings were go... - 19:56 Bug #243 (Backlog): App/App produces tons of warnings
- 18:39 Bug #244 (Resolved): OutputDataIOFactory: make consistent [x][y] axis ordering while writing/read...
- 14:40 Bug #244 (Sprint): OutputDataIOFactory: make consistent [x][y] axis ordering while writing/readin...
- 14:39 Bug #244 (Archived): OutputDataIOFactory: make consistent [x][y] axis ordering while writing/read...
24 Mar 2013
- 08:53 Bug #243 (Rejected): App/App produces tons of warnings
- after fresh compilation of the entire project, App/App produces tons of warnings.
$ uname -a
Linux h4 3.2.0-4-amd...
23 Mar 2013
- 18:49 Refactoring #242 (Archived): use GSL for random number sampling
- Why write GenerateStandardNormalRandom() ourselves?
See
http://www.gnu.org/software/gsl/manual/html_node/The-Gauss... - 18:38 Documentation #241 (Archived): simplify redmine workflow
- It must be possible at any moment to mark an issue as rejected or resolved or "in progress".
The workflow describe... - 14:11 Documentation #201 (Archived): insert pub/ into directory structure
- merged into #240 Renaming campaign.
- 13:16 Refactoring #230 (Rejected): no CamelCase in Formfactor
- merged into #240
- 13:16 Refactoring #230 (Backlog): no CamelCase in Formfactor
- 13:15 Refactoring #240 (Backlog): Renaming campaign
- 13:10 Refactoring #240 (Rejected): Renaming campaign
- Bundle restructuring of directories and renaming of entities in a coordinated action, possibly between two sprints or...
- 13:04 Refactoring #233: Simplify Geometry classes
- Still to do: eliminate translational component from Transform3D.
- 10:31 Documentation #239: clean up redmine
- Is NSE.git still in use? Then give it a more explicit name.
- 10:00 Documentation #239: clean up redmine
- Project "IT Infrastructure" contains only wiki pages. Move them to our Dokuwiki.
- 09:59 Documentation #239 (Archived): clean up redmine
- Project "Scattering simulation framework" seems to be obsolete, right ?
22 Mar 2013
- 17:07 Testing #228 (Sprint): Add mesocrystal test in Functional TestCor and TestPyCore
- 17:07 Testing #228 (Backlog): Add mesocrystal test in Functional TestCor and TestPyCore
- 16:34 Bug #237 (Resolved): replace "inline BasicVector3D<double> operator+" and similar by templated im...
- 16:33 Bug #237 (Sprint): replace "inline BasicVector3D<double> operator+" and similar by templated impl...
- 16:33 Bug #237 (Backlog): replace "inline BasicVector3D<double> operator+" and similar by templated imp...
- 11:45 Refactoring #233: Simplify Geometry classes
- We will not use CLHEP/Geometry in its present form as our generic library for 3D geometry. Therefore, I threw away th...
- 11:06 Refactoring #234: avoid templates - e.g. in integration wrapper MemberFunctionIntegrator.h
- Just a remark on the use of templates in the case of MemberFunctionIntegrator:
The idea is that in an OO program, th...
21 Mar 2013
- 23:53 Bug #237: replace "inline BasicVector3D<double> operator+" and similar by templated implementation
- If I understand correctly, right now we have conversions int -> double -> int.
Performance tests will show whether... - 23:51 Bug #237 (Resolved): replace "inline BasicVector3D<double> operator+" and similar by templated im...
- I suspect this is the reason why BasicVector3D<int> causes tests to perform 5% slower than with old Coordinate3D<int>.
- 18:39 Refactoring #236 (Rejected): multi-line comment style
- instead of this
// ******************************** //
// this is our multi line header
// another line
// ****... - 18:05 Refactoring #223 (Resolved): Get rid from instance() method for all singletons
- 14:53 Refactoring #223 (Sprint): Get rid from instance() method for all singletons
- 13:46 Documentation #235 (Backlog): Metrics for compile time and execution time
- 11:45 Documentation #235 (Archived): Metrics for compile time and execution time
- Provide metrics so that we can evaluate the effect of optimizations upon compile time and execution time.
Possible w... - 13:37 Bug #229 (Backlog): PythonAPI: provide Py++ code generation under Linux
- 10:10 Bug #229 (Archived): PythonAPI: provide Py++ code generation under Linux
- 12:05 Refactoring #227 (Resolved): Check replacement of Coordinate3D<int> by Geometry::BasicVector3D<int>
- 12:04 Refactoring #227 (Sprint): Check replacement of Coordinate3D<int> by Geometry::BasicVector3D<int>
- 12:04 Refactoring #227 (Backlog): Check replacement of Coordinate3D<int> by Geometry::BasicVector3D<int>
- 01:14 Refactoring #227 (Archived): Check replacement of Coordinate3D<int> by Geometry::BasicVector3D<int>
- If Coordinate3D.h in develop really works, then eliminate it altogether.
- 11:27 Refactoring #234 (Rejected): avoid templates - e.g. in integration wrapper MemberFunctionIntegrat...
- To accelerate compilation, review use of class-valued templates.
Prefer static functions (file scope) over unneces... - 11:22 Refactoring #233 (Resolved): Simplify Geometry classes
- Seems, of the six include files (BasicVector3D.h Plane3D.h Transform3D.h Normal3D.h Point3D.h Vector3D.h) only two (B...
- 11:02 Refactoring #232 (Archived): rename "min" and "max" in TRange, ...
- In my mind, "min" and "max" designate the lowest and highest value actually realized.
For the lowest and highest a... - 10:56 Refactoring #231 (Rejected): eliminate class TSampledRange
- combining a range and a number of whatever into one class appears rather arbitrary to me; it seems to be used only once.
- 10:55 Refactoring #230 (Rejected): no CamelCase in Formfactor
- Rename "FormFactor" into "Formfactor".
Concerns file and class names.
Rationale: Reserve CamelCase to split names... - 09:30 Testing #228 (Archived): Add mesocrystal test in Functional TestCor and TestPyCore
- 01:11 Bug #226 (Archived): check mathematics behind complex->complex usage of mag, magxy, dot, cross, c...
- Scalar product of complex vectors a,b usually is the real value a.conj*b.
What's the mathematics behind a function d...
20 Mar 2013
- 23:53 Documentation #197: Unified header comment for all source files
- Done for Core. TODO for App, .. ?
- 08:11 Documentation #197 (In Progress): Unified header comment for all source files
- done for Core except Core/Geometry
- 20:51 Feature #60 (Resolved): Framework general: implement simple logging tool with control of output l...
- 17:57 Refactoring #225 (Rejected): Provide import of ProgramOptions (nthreads, level of logging) into l...
- To discuss... We need a way to propagate CoreOptions (number of threads, level of logging) into libBornAgainCore in t...
- 08:39 Documentation #198 (Resolved): Contents for doxygen entry page
- Minimal contents provided (source: Core/mainpage.dox).
Ideas for further contents? - 08:16 Documentation #200 (In Progress): Doxygen comments for all classes
- 08:15 Documentation #224 (Resolved): shut down overnight Doxygen update
- and delete Doc/Doxygen, since we have a new Doxygen pipe using git hook post-receive.
Eliminate links to old URL; ... - 08:09 Documentation #205 (Resolved): Create script for patching source code files with info header
- Scripts are collected in new directory dev-tools/edit-scripts
19 Mar 2013
- 20:39 Feature #217 (Resolved): Provide libBornAgainFitCore with ROOT minimizer wrappers
- 14:40 Feature #219 (Resolved): Provide python script editing in GUI
- 12:50 Feature #222 (Backlog): PythonAPI: provide import of OutputData class from numpy array
- 12:49 Feature #222 (Rejected): PythonAPI: provide import of OutputData class from numpy array
- 12:50 Refactoring #223 (Archived): Get rid from instance() method for all singletons
- 11:28 Feature #60 (Sprint): Framework general: implement simple logging tool with control of output level
18 Mar 2013
- 15:12 Refactoring #204 (Sprint): Implement ISampleVisitor
- 15:12 Refactoring #204 (Backlog): Implement ISampleVisitor
- 15:12 Testing #209 (Sprint): Run valgrind on all FunctionalTests
- 15:11 Documentation #212 (Sprint): Write description of isgisaxs01 example for User Manual using latex
- 15:11 Bug #214 (Sprint): Weird double delete somewhere in boost/gzip while runing functional tests on m...
- 11:29 Bug #214 (Backlog): Weird double delete somewhere in boost/gzip while runing functional tests on ...
- 15:11 Feature #217 (Sprint): Provide libBornAgainFitCore with ROOT minimizer wrappers
- 15:11 Feature #218 (Sprint): Provide python example of fitting using external ROOT
- 14:54 Bug #220 (Sprint): Gui: provide GUI compilation under Qt5/linux
- 14:35 Bug #220 (Archived): Gui: provide GUI compilation under Qt5/linux
- The problem is, again, in qtroot wrapper, which is not fully ported to Qt5 under X11. The current problem is in absen...
- 14:41 Documentation #206 (Archived): Repair class diagram on apps server
- 14:41 Bug #207 (Archived): PythonAPI: resolve problem with duplications in automatically generated boos...
- 14:41 Bug #213 (Archived): Fix wrong measurements of CPU while running C++ FunctionalTests using test_a...
- 14:41 Bug #193 (Archived): Fix GUI resizing on moving application in jobview
- 14:41 Feature #194 (Archived): Implement job threads using QtConcurrent instead of QThread
- 14:41 Feature #195 (Archived): Make welcome page of GUI link to BornAgain website using Qt WebKit
- 14:41 Documentation #196 (Archived): Create nice plot with gisaxs geometry
- 14:41 Bug #202 (Archived): cannot link under debian/wheezy: libMinuit2 not found
- 14:41 Feature #203 (Archived): Building: provide check for set of available ROOT libraries
- 14:41 Documentation #184 (Archived): Prepare talk for HDRI workshop
- 14:41 Feature #185 (Archived): Link job outputs to GUI
- 14:41 Feature #186 (Archived): Create prototype python scripting for GUI
- 14:41 Documentation #187 (Archived): Prepare poster for ADD2013 conference
- 14:39 Documentation #187 (Resolved): Prepare poster for ADD2013 conference
- 14:41 Feature #190 (Archived): Gui: provide opengl QtRoot part compiled under Qt5
- 14:41 Feature #192 (Archived): Prevent rebuilding of root histograms in jobview
- 14:41 Feature #175 (Archived): Add all IsGISAXS examples to python functional tests
- 14:41 Feature #179 (Archived): Link Core library to GUI
- 14:41 Feature #181 (Archived): Link InstrumentView to SimulationDataModel
- 14:41 Feature #182 (Archived): Link SimulationView to SimulationDataModel
- 14:41 Feature #183 (Archived): Gui: make access to icons through common resource file
- 14:41 Feature #172 (Archived): Gui prototype: implement ToolBox (layers, form factors) prototype for Sa...
- 11:20 Feature #188: GUI for sample definition (design and implement prototype)
- Postponing this issue until the end of workshop
- 11:19 Bug #191: Gui: improve performance of TQtWidget in the case of CONT4Z option
- For the moment it is possible to increase performance by 20% using code modification in TGQt::DrawFillArea(int n, TPo...
15 Mar 2013
- 12:57 Feature #219 (Sprint): Provide python script editing in GUI
- 12:57 Feature #219 (Archived): Provide python script editing in GUI
- 12:49 Feature #218 (Archived): Provide python example of fitting using external ROOT
- 12:45 Bug #214 (Sprint): Weird double delete somewhere in boost/gzip while runing functional tests on m...
- 12:45 Bug #214 (Backlog): Weird double delete somewhere in boost/gzip while runing functional tests on ...
- 12:45 Feature #217 (Archived): Provide libBornAgainFitCore with ROOT minimizer wrappers
- 12:37 Documentation #216 (Archived): Provide how to install for minimal installations of: Debian wheezy
- resolved in two ways:
- installation instructions using .deb packages
- CMake build instructions - 12:34 Documentation #205: Create script for patching source code files with info header
- goes along with #197
- 12:33 Documentation #197: Unified header comment for all source files
- 12:30 Documentation #215 (Archived): give advise on minimal ROOT compilation
- With new CMake built instructions, this is basically done. Most options can be switched OFF. At present, only the fol...
- 09:52 Documentation #196 (Resolved): Create nice plot with gisaxs geometry
14 Mar 2013
- 23:21 Documentation #199: uniform use of "bornagain" in all project pages and URLs
- - done inside Redmine
- done inside Doxygen (improved config file in pub/core)
- still TODO: move Doxygen from http... - 10:16 Documentation #216 (Archived): Provide how to install for minimal installations of: Debian wheezy
13 Mar 2013
- 14:49 Documentation #196 (Sprint): Create nice plot with gisaxs geometry
- 14:49 Bug #207 (Resolved): PythonAPI: resolve problem with duplications in automatically generated boos...
- 14:48 Feature #175 (Resolved): Add all IsGISAXS examples to python functional tests
- 14:41 Bug #213 (Resolved): Fix wrong measurements of CPU while running C++ FunctionalTests using test_a...
- 14:41 Bug #213 (Sprint): Fix wrong measurements of CPU while running C++ FunctionalTests using test_all.py
12 Mar 2013
- 23:36 Documentation #215 (Archived): give advise on minimal ROOT compilation
- In apps.jcns.fz-juelich.de/doku/sc/bornagain:installing_root we should describe how to compile ROOT with minimum prer...
- 23:26 Bug #214 (Archived): Weird double delete somewhere in boost/gzip while runing functional tests on...
- 23:22 Bug #213 (Archived): Fix wrong measurements of CPU while running C++ FunctionalTests using test_a...
- 20:53 Documentation #212 (Resolved): Write description of isgisaxs01 example for User Manual using latex
- 17:09 Bug #193 (Resolved): Fix GUI resizing on moving application in jobview
- 15:58 Feature #192 (Resolved): Prevent rebuilding of root histograms in jobview
- the histogram is now cached inside JobModel object
- 10:44 Refactoring #211 (Rejected): Get rid from fixRatioBetweenParameters in parameter pool by introduc...
- 10:02 Testing #209 (Archived): Run valgrind on all FunctionalTests
11 Mar 2013
- 15:22 Documentation #206 (Resolved): Repair class diagram on apps server
- 15:22 Documentation #206 (Sprint): Repair class diagram on apps server
- 15:22 Documentation #206 (Backlog): Repair class diagram on apps server
- 12:54 Documentation #206 (Archived): Repair class diagram on apps server
- 13:26 Bug #207 (Sprint): PythonAPI: resolve problem with duplications in automatically generated boost/...
- 13:26 Bug #207 (Archived): PythonAPI: resolve problem with duplications in automatically generated boos...
- 12:39 Documentation #205 (Resolved): Create script for patching source code files with info header
10 Mar 2013
- 21:39 Refactoring #204 (Archived): Implement ISampleVisitor
- 19:13 Bug #202 (Resolved): cannot link under debian/wheezy: libMinuit2 not found
- 19:13 Bug #202 (Sprint): cannot link under debian/wheezy: libMinuit2 not found
- 19:12 Bug #202 (Backlog): cannot link under debian/wheezy: libMinuit2 not found
- ROOT has to be configured with
./configure --all option
to bring additional minimizer libraries. I have added check... - 19:12 Feature #203 (Resolved): Building: provide check for set of available ROOT libraries
- 16:22 Feature #203 (Sprint): Building: provide check for set of available ROOT libraries
- 16:22 Feature #203 (Archived): Building: provide check for set of available ROOT libraries
09 Mar 2013
- 00:53 Bug #202 (Archived): cannot link under debian/wheezy: libMinuit2 not found
- cd App/ && make -f Makefile
make[1]: Entering directory `/home/jwu/BornAgain/App'
g++ -m64 -Wl,-O1 -o App obj/IsGI... - 14:09 Documentation #199: uniform use of "bornagain" in all project pages and URLs
- then update links in wiki (http://apps.jcns.fz-juelich.de/doku/sc/bornagain:start, ?)
- 11:04 Documentation #199 (Archived): uniform use of "bornagain" in all project pages and URLs
- http://apps.jcns.fz-juelich.de/redmine/projects/gisasframework/
http://apps.jcns.fz-juelich.de/gisas/doc/api/ with h... - 11:26 Documentation #201 (Archived): insert pub/ into directory structure
- to prepare for a source release, I propose to insert a directory level
BornAgain/pub
Move everything from pre... - 11:11 Documentation #200 (Rejected): Doxygen comments for all classes
- Write missing doxygen comments for classes, method, member variables.
Unify the wording.
Follow conventions of Qt.
... - 10:51 Documentation #198 (Resolved): Contents for doxygen entry page
- Do something like
http://apps.jcns.fz-juelich.de/doxy/frida/frida2_8cpp_source.html
to obtain something like
h... - 10:49 Documentation #197 (Archived): Unified header comment for all source files
- Mostly done for Core.
Extend to GUI and to Tests. Postponed while waiting for possible restructuring.
08 Mar 2013
07 Mar 2013
- 14:23 Documentation #196 (Archived): Create nice plot with gisaxs geometry
- 13:42 Feature #190 (Resolved): Gui: provide opengl QtRoot part compiled under Qt5
- 13:33 Feature #195 (Resolved): Make welcome page of GUI link to BornAgain website using Qt WebKit
- 13:32 Feature #195 (Sprint): Make welcome page of GUI link to BornAgain website using Qt WebKit
- 13:32 Feature #195 (Archived): Make welcome page of GUI link to BornAgain website using Qt WebKit
- 12:55 Feature #194 (Sprint): Implement job threads using QtConcurrent instead of QThread
- 12:55 Feature #194 (Archived): Implement job threads using QtConcurrent instead of QThread
06 Mar 2013
- 15:49 Bug #193 (Sprint): Fix GUI resizing on moving application in jobview
- 15:49 Bug #193 (Archived): Fix GUI resizing on moving application in jobview
- 15:35 Feature #192 (Sprint): Prevent rebuilding of root histograms in jobview
- 15:35 Feature #192 (Backlog): Prevent rebuilding of root histograms in jobview
- 15:35 Feature #192 (Archived): Prevent rebuilding of root histograms in jobview
- Make a cached dictionary of jobs and their histograms
- 15:27 Feature #190 (Sprint): Gui: provide opengl QtRoot part compiled under Qt5
- 15:21 Feature #190 (Backlog): Gui: provide opengl QtRoot part compiled under Qt5
- 15:27 Bug #191 (Sprint): Gui: improve performance of TQtWidget in the case of CONT4Z option
- 15:20 Bug #191 (Backlog): Gui: improve performance of TQtWidget in the case of CONT4Z option
- 15:19 Bug #191 (Rejected): Gui: improve performance of TQtWidget in the case of CONT4Z option
05 Mar 2013
- 12:24 Feature #190 (Archived): Gui: provide opengl QtRoot part compiled under Qt5
- 12:23 Feature #189 (Rejected): GUI: implement prototype(s), decide about architecture
- This is the parent of all GUI-related issues: We need to choose an architecture before investing any further effort i...
- 12:22 Documentation #184 (Resolved): Prepare talk for HDRI workshop
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