Activity

From 23 Sep 2013 to 22 Oct 2013

21 Oct 2013

10:51 Documentation #458 (Archived): Prepare talk about Python bindings for ILL
pospelov
10:13 Testing #457 (Resolved): Implement unit tests for form factors
celine

19 Oct 2013

11:17 Documentation #456 (Archived): Prepare talk "Data Analysis in HEP" for ILL
pospelov

18 Oct 2013

11:15 Revision 839502ca: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
pospelov
11:15 Revision 8466c669: Another qmake fix
pospelov
11:03 Revision 2f0daf30: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
herck
11:02 Revision ff13037e: Added python demos to git
herck
10:59 Revision f33c1b6e: Fix for qmake
pospelov
10:05 Revision ae0fe894: Bug fix in fitting introduced with the last refactoring fixed.
pospelov
10:03 Documentation #455 (Archived): Add demos into Examples/python section
Those demos which Walter has prepared for Hamburg/ILL.
With short README.
pospelov
09:39 Feature #454 (Archived): Change behavior of setParameterValue
If there is '*' in the parameter name, then setMatchedParametersValue should be used instead of setParameterValue
Up...
pospelov
09:19 Revision b167db30: Merge branch 'FitManual'
Conflicts:
CMakeLists.txt
Core/PythonAPI/src/FormFactorGauss.pypp.cpp
pospelov
09:13 Revision 71731a1e: Manual: gentle introduction to the data fitting
pospelov

17 Oct 2013

14:43 Revision 3090132c: New TestToyFitting to illustrate the manual
pospelov
11:34 Feature #450 (Resolved): Provide python function to retrieve polarized output data
herck
10:06 Feature #450 (Archived): Provide python function to retrieve polarized output data
herck
11:34 Revision 097bd31f: Merge branch 'python_pol_outputdata' into develop
herck
11:34 Revision ed71125c: Added global function to retrieve polarized output data in python
herck
09:42 Documentation #449 (Archived): Review manual's simulation python example section to conform chang...
pospelov
09:38 Refactoring #443 (Resolved): Refactor IMinimizer for better control of minimizer option
pospelov

16 Oct 2013

17:59 Revision 50e5e38f: Fitting example explained + lots of changes in fitting PythonAPI
pospelov
17:51 Revision 3e41c917: Reset python & app building to defaults
herck
17:47 Revision 5356e3bd: Merge branch 'mc_ff2' into develop
herck
17:43 Revision 38c10873: Found Gaussian FormFactor problem: height was much bigger than layer thickness...
herck
17:42 Documentation #448 (Archived): Examples: prepare FitCylindersAndPrism_detailed example
It has to contain access to Simulated data with optimal parameters from the fit and simple matplotlib visualization
...
pospelov
13:49 Revision 969f7742: Use Gauss form factor for mesocrystal simulation
herck
13:49 Revision b903250e: Add getVolume() to FormFactorGauss
herck
13:49 Revision 6061c84a: Changed lattice calculations
herck
13:49 Revision 85c0495c: Refactored FormFactorGauss
herck
13:49 Revision c601a047: Updated Xcode project
herck
10:58 Revision c30bb52c: UserManual section: associating model and reference in the fit
pospelov
10:38 Revision 0c260094: Put back hardcoded BAVersion.h file to fix quake build
herck

15 Oct 2013

17:42 Revision e8c823e1: Minimizer setting parts in User manual and corresponding refactoring (Minimize...
pospelov
15:51 Bug #447 (Archived): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
Add another minimum required version 2.8.10(?) or add own version of PARSE_MACRO pospelov
13:31 Revision bf82b22e: Adapt release script
herck
13:12 Refactoring #236: multi-line comment style
In 'modern' IDE's, the symmetric version can also be collapsed :) herck
12:59 Refactoring #236 (Backlog): multi-line comment style
libBornAgainFit should be equipped with correct header too
pospelov
11:44 Revision 3b3bd5ba: New method printSampleTree for python users comfort
pospelov
11:11 Feature #446 (Archived): Repair broken Genetic minimizer after we get rid from ROOT dependency
pospelov
11:06 Revision ba8aab07: Merge branch 'iss417' into develop
Conflicts:
CMakeLists.txt
herck
11:02 Testing #445 (Archived): Implement BornAgainFit unit test infrastructure
pospelov
11:01 Revision c6f0846c: IParameterized::setParameterValue behavior changed to the global pool
pospelov
10:06 Feature #444 (Archived): Prepare talk for ILL
herck
09:14 Refactoring #443 (Archived): Refactor IMinimizer for better control of minimizer option
pospelov

14 Oct 2013

17:07 Revision 612408ff: Some other minor changes to the release script.
ganeva
16:29 Documentation #439 (Resolved): Explain sample parameters paradigm in simulation examples section
pospelov
16:28 Revision 2958ce78: Sample parameter pool is explained
pospelov
16:23 Revision df10fcfb: Some small corrections to the release script.
ganeva
15:41 Revision dc0c1b1a: Added menu to the release script.
ganeva

11 Oct 2013

18:44 Revision 200a314f: Manual: fitting implementation details in BornAgain
pospelov
18:03 Documentation #442 (Rejected): Review SoftwareDesignOverview section

Walter?
pospelov
16:22 Documentation #441 (Archived): Prepare talk for Koordinierungstreffen
pospelov
15:58 Documentation #440 (Resolved): Create svg plot representing minimization flow
pospelov
13:47 Documentation #440 (Archived): Create svg plot representing minimization flow
pospelov
15:58 Feature #438 (Resolved): Adjust existing python examples to conform PEP8 style
pospelov
09:36 Feature #438 (Archived): Adjust existing python examples to conform PEP8 style
pospelov
15:56 Revision 03f11a41: New plot with minimization workflow
pospelov
13:48 Refactoring #436 (Sprint): Refactor ISample, IParameterized and ParameterPool for better access t...
pospelov
13:47 Feature #437 (Sprint): Provide OutputData with ExportToNumpy function for PythonAPI
pospelov
12:34 Documentation #439 (Archived): Explain sample parameters paradigm in simulation examples section
pospelov
11:24 Revision 6d300e37: Added graphics in SampleParametersIntro.py, all other python examples modified...
pospelov

10 Oct 2013

16:06 Feature #437 (Archived): Provide OutputData with ExportToNumpy function for PythonAPI
This has to be discussed. We need some general approach to access OutputData in Python,
including the cases when Out...
pospelov
15:59 Feature #287 (Backlog): IntensityData campaign
pospelov
15:57 Refactoring #436 (Archived): Refactor ISample, IParameterized and ParameterPool for better access...
Refactor ISample, IParameterized and ParameterPool for better access to global ISample's parameter pool and natural i... pospelov
15:54 Feature #34: Implement different types of detector scans

This must be the part of some other activity, not OutputData
pospelov
14:59 Feature #434 (Rejected): User Requests campaign
pospelov
14:33 Feature #434 (Rejected): User Requests campaign
This is the issue to group different user requests pospelov
14:39 Feature #435 (Archived): Request: provide JFM with the python script simulating the sample_jfm1
sample_jfm1 means two homogeneous layers with spheres 50nm at hexagonal lattice.
There will be probably other reques...
pospelov
09:43 Revision 098c64d0: New example SampleParametersIntro
pospelov

09 Oct 2013

23:05 Documentation #432: Examples: prepare example with correlated roughness interface
Also provide one example with just a single rough interface herck

08 Oct 2013

23:38 Documentation #433 (Rejected): Write paragraph with performance comparison IsGISAXS vs FitGISAXS ...
pospelov
17:24 Documentation #432 (Archived): Examples: prepare example with correlated roughness interface
pospelov
17:09 Feature #431 (Archived): Build: provide thisbornagain.sh to set system PATHs to the installation ...
pospelov
15:45 Revision d705ffb9: Restructured example directory, setMatchedParameterValue added to ISample
pospelov
10:01 Feature #430 (Archived): Examples: prepare example with core shell nanoparticles
This should be taken from
./Tests/FunctionalTests/TestPyCore/isgisaxs11.py
During GISAXS2013 workshop there were ...
pospelov
09:20 Documentation #423 (Resolved): Prepare demo for GISASXS 2013
herck
07:19 Revision d0971a8b: GUI in Unix is repaired (was broken after Windows build)
pospelov

07 Oct 2013

16:46 Documentation #429 (Archived): Write Appendix which lists all implemented examples from Examples ...
With plots which are produced by every example. pospelov
16:42 Envelope task #428 (Archived): == IsGISAXS coverage ==
This is the main issue for all sub-tasks related to the still missed IsGISAXS functionality.
The main goal of activi...
pospelov
16:34 Documentation #427 (Rejected): User Examples campaign
This is a master issue for all usage examples to be placed in Examples section.
These examples should clearly demon...
pospelov
15:41 Revision 89483a09: New edition of the release deployment script.
ganeva

06 Oct 2013

11:09 Documentation #426 (Archived): Examples: prepare C++ standalone example in Examples section
We need one standalone C++ example in Examples/cpp/ex001_CylindersAndPrism which will reproduce python example from
...
pospelov
10:38 Testing #412 (Backlog): Unit and functional tests campaign
pospelov
10:36 Feature #420 (Backlog): Refactor BornAgainCPack by removing generator's setting in separate files
pospelov
10:36 Feature #425 (Backlog): Write deployment script for Windows
pospelov
10:34 Feature #425 (Rejected): Write deployment script for Windows
* Script should automatize generation of installer package
* Discuss with our IT the possibility to organize build a...
pospelov
10:36 Feature #418 (Backlog): === Configuration & Build ===
pospelov

02 Oct 2013

14:51 Envelope task #424 (Archived): === PythonAPI ===
There are several problems to address
* Provide argument list in functions and constructors with readable helper i...
pospelov
14:35 Testing #414 (Sprint): Implement functional test: polarized DWBA with zero magnetic field
pospelov
14:35 Testing #421 (Sprint): Repair Performance test
pospelov
14:19 Testing #413 (Sprint): Repair MesoCrystal functional test
pospelov
14:00 Documentation #404 (Resolved): Prepare poster for GISAXS2013 Workshop in Hamburg
pospelov
14:00 Feature #396 (Resolved): Create deb package
pospelov
13:58 Feature #396 (Sprint): Create deb package
pospelov
13:59 Feature #417 (Resolved): implement automatic propagation of BornAgain version number into cmake
pospelov
13:58 Feature #417 (Sprint): implement automatic propagation of BornAgain version number into cmake
pospelov
13:59 Feature #419 (Sprint): Write deployment script which will automatize the release
pospelov
13:46 Revision bdcc861e: Command line version of python script for lines of code cl_lines_of_code.py is...
ganeva

01 Oct 2013

16:53 Revision d68e0833: Remove large bin approximation for FormFactorGauss
herck
16:47 Revision 5e67cb17: Refactor: rename
herck
16:46 Revision e1a182f1: Fixed cmake warning for gtest
herck
13:30 Revision 0387afa8: 1. The variables to set the BornAgain version are all shifted to the main CMak...
2. Fixed dependencies for the debian package building. Fixed garbage production in the package/bin folder. ganeva

30 Sep 2013

17:10 Revision d788cace: Writen CMakeLists.txt to build the user manual using CMake. Just switch on the...
ganeva
14:07 Revision 0a564633: Implemented automatic propagation of BornAgain version number via cmake. Versi...
ganeva
10:22 Documentation #423 (Archived): Prepare demo for GISASXS 2013
herck
09:55 Documentation #398 (Resolved): default installation from tgz; direct only experts to git snapshot
As a compromise, I put both options into QuickStart on Unix Platforms.
The idea, is that the person, who is happy ...
pospelov
09:51 Documentation #422 (Rejected): Write page with BornAgain / IsGISAXS comparison
pospelov
09:49 Testing #421 (Rejected): Repair Performance test
pospelov

27 Sep 2013

16:52 Revision 342459c5: Typos in user manual
pospelov
16:49 Documentation #408 (Resolved): Update wiki page to conform with the UserManual
pospelov
14:29 Revision 79eec15a: Release fixes, missed bin directory
pospelov
14:19 Revision ba17540a: Release fixes in CMake
pospelov
14:06 Revision 88affd82: Updates in manual
pospelov
13:56 Revision a8907220: Release preparations
pospelov
12:54 Revision 083c8757: Hide debian clack staff behind option
pospelov
12:41 Feature #420 (Rejected): Refactor BornAgainCPack by removing generator's setting in separate files
BornAgainCPack should include
CPackDebian
CPackSource
etc
with settings
pospelov
11:41 Revision ad458bd6: Merge branch 'packsource' into develop
pospelov
11:39 Revision d1baac0a: Merge branch 'packsource' of apps.jcns.fz-juelich.de:BornAgain into packsource
pospelov
11:38 Revision 0c985a33: Added changelog for debian package
ganeva
11:38 Revision 1df35c03: Minor changes in cpack
pospelov
11:26 Revision 19a7569d: Edited UserManual
herck
11:21 Feature #395 (Backlog): Create rpm package
pospelov
11:21 Feature #396 (Backlog): Create deb package
pospelov
11:20 Feature #419 (Archived): Write deployment script which will automatize the release

Ok, Walter was probably right.
We should start from writing the deployment script which will automatize as much as...
pospelov
11:11 Feature #418 (Rejected): === Configuration & Build ===
pospelov
10:37 Feature #417 (Archived): implement automatic propagation of BornAgain version number into cmake
The goal is to generate tarball with correct version number in the name.
By parsing BAVersion.h file inside cmake....
pospelov
10:24 Revision 8ac79c58: Merge branch 'ManualFit' into develop
pospelov
10:19 Revision d2ccfd70: Minor updates in UserManual
pospelov
10:16 Revision 91514fca: Added cpack options to generate quick and dirty debian package using cpack or ...
ganeva

26 Sep 2013

16:36 Revision 7b49dec6: Merge branch 'manual_fit_version3' into develop
celine
16:25 Feature #410 (Sprint): Review and improve on mesocrystal form factors
herck
16:24 Revision ee7fe775: Form factor - corrections of some typos in header files
celine
15:46 Revision 02de3d09: Refactor: source code width
herck
14:50 Revision 90438ca0: Adapted eclipse project file
herck
14:35 Revision 4e71559d: Refactor: rename local variables and make cvector_t construction less ambiguous
herck
14:26 Refactoring #416 (Archived): CHeck and fix //TODO's and //FIXME's
herck
14:25 Feature #367 (Resolved): Provide treatment of detector resolution for polarized neutrons
herck
14:25 Feature #411 (Resolved): Provide help functions for analysis of polarized OutputData structures
herck
10:26 Feature #411 (Sprint): Provide help functions for analysis of polarized OutputData structures
herck
14:24 Revision 7dbc22b6: Merge branch 'pol_det_resolution' into develop
herck
14:24 Revision 6cc20852: Implemented application of detector resolution to matrix-valued intensity data
herck
11:49 Revision d60d7847: Added more regexps to the list of files which should be ignored by generating ...
ganeva
11:39 Revision a0fc53d7: Added helper functions for matrix-valued OutputData objects
herck
10:47 Revision 433d10f2: Replaced refractive index by IMaterial in DiffuseDWBASimulation
herck

25 Sep 2013

18:10 Revision e42c79e9: UserManual: moved listings in Appendix
pospelov
17:40 Documentation #406 (Resolved): Review Software Architecture section
Wrote one introductory page for the software architecture and updated plot. Included Walter's old Architecture.tex a... pospelov
17:20 Revision 2a888219: Walter's Architecture.tex is added to the user manual
pospelov
17:10 Revision eadbaaae: Set options for CPack source generator to build the source package.
ganeva
17:05 Refactoring #370 (Resolved): Remove unnecessary code duplication introduced during implementation...
herck
17:04 Feature #390 (Resolved): Make implementations of interference functions transparent to whether co...
herck
17:03 Revision db5ebcee: Refactor: moved some methods of IInterferenceFunctionStrategy to private
herck
16:50 Testing #414 (Archived): Implement functional test: polarized DWBA with zero magnetic field
pospelov
16:48 Testing #413 (Archived): Repair MesoCrystal functional test
pospelov
16:47 Testing #412 (Resolved): Unit and functional tests campaign
pospelov
16:42 Revision 9281bd05: Merge branch 'if_strategies' into develop
herck
16:42 Revision bcb98762: Made interference function strategies independent of scalar/matrix formalism; ...
herck
16:25 Revision 1126a5dd: Update in software Architecture
pospelov
11:39 Revision 80427155: Added polarized strategy for Decoupling Approximation
herck
11:20 Feature #411 (Resolved): Provide help functions for analysis of polarized OutputData structures
A polarized OutputData structure consists of a 2-dimensional array of 2x2 matrices.
Provide a global function that r...
herck
11:15 Feature #410 (Archived): Review and improve on mesocrystal form factors
Taking into account that the coherence domain of the crystal structure is limited, the shape of the Bragg peaks could... herck
11:12 Refactoring #409 (Backlog): Remove duplicate functions "evaluate" and "evaluatePol"
Both form factors and interference functions contain "evaluate" and "evaluatePol" methods for scalar and matrix ampli... herck

24 Sep 2013

17:29 Revision 2cd2b1fd: Update in Installation section
pospelov
17:28 Documentation #407 (Resolved): Review Installation section
pospelov
16:15 Documentation #407 (Resolved): Review Installation section
pospelov
17:27 Documentation #408 (Resolved): Update wiki page to conform with the UserManual
pospelov
17:13 Feature #399 (Resolved): Provide diffuse calculation for polarized mesocrystals
herck
16:48 Revision fba8c4a0: Updated quake .pro file
herck
16:39 Revision 89f19056: Merge branch 'diffuse_polarized' into develop
herck
16:39 Revision 62a109bf: Fixed some problems with ambient material not being initialized in diffuse for...
herck
10:45 Documentation #406 (Resolved): Review Software Architecture section
pospelov
09:59 Feature #405 (Rejected): Move filepath definitions to one single class/namespace
Currently, all functional tests are required to define "magic paths" that refer to reference data with which to compa... herck

23 Sep 2013

17:52 Revision c1a77f14: Different location of installed libraries for Windows and Linux
pospelov
17:00 Bug #403 (Resolved): Debian unittest failure
pospelov
16:27 Revision 0d1c6be6: Merge branch 'DebianBuild'
pospelov
16:26 Revision 3f344fe2: Eigen alignment issue on Debian i386
pospelov
15:41 Revision 48999989: Can I push?
pospelov
14:46 Revision 7afdd12c: test if I can push
pospelov
12:54 Revision da7e1c1a: Aesthetic, whatever it means
pospelov
11:51 Documentation #404 (Archived): Prepare poster for GISAXS2013 Workshop in Hamburg
pospelov
11:42 Revision a42fd328: Fixed bugs in: Refactor: pulled dwba decoration of form factors out of LayerSt...
herck
11:36 Revision 5dde68c7: Refactor: pulled dwba decoration of form factors out of LayerStrategyBuilder a...
herck
10:51 Revision eea2996c: Refactor: replaced std::vector of pointers with SafePointerVector
herck
10:33 Revision 224c8c0e: Refactor: removed runMagnetic()
herck
10:04 Revision e4779b06: Merge branch 'master' of apps.jcns.fz-juelich.de:BornAgain into develop
pospelov
 

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