Activity
From 09 Oct 2013 to 07 Nov 2013
07 Nov 2013
- 19:05 Revision 6ade0868: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 18:21 Support #460: Create git repository for user related info
- and use common JCNS fileserver for data exchange
- 14:29 Support #460 (Resolved): Create git repository for user related info
- Redmine subproject created. Git repository will only be created if needed.
- 16:32 Documentation #487 (Rejected): Provide screenshots for project homepage
- A screenshot section is standard for a project homepage, and for good reason: potential users want to get a first imp...
- 16:25 Feature #300: Investigate alternatives to Monte-Carlo computation of non-analytic form factors
- For license reasons, we will not be able to copy the solution from HipGisas.
Open-source libraries that may help for... - 15:46 Feature #486 (Archived): Implement/review Spheroid formfactor
- * validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu... - 15:45 Feature #485 (Archived): Implement/review Anisotropic hemi-spheroid formfactor
- * validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu... - 15:45 Feature #484 (Archived): Implement/review Ellipsoid formfactor
- * validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu... - 15:45 Feature #483 (Archived): Implement/review Anisotropic pyramid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...- 15:44 Feature #482 (Archived): Implement/review Full spheroid formfactor
- * validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu... - 15:44 Feature #481 (Archived): Implement/review Cybooctaedron formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...- 15:43 Feature #480 (Archived): Implement/review Cone6 formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...- 15:42 Feature #479 (Archived): Implement/review Prism6 formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...- 15:42 Feature #478 (Archived): Implement/review Tethraedron formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...- 15:41 Feature #477 (Archived): Implement/review Cone formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (get...- 15:32 Documentation #475 (Archived): Create prototype of latex (pdf) page representing form factor
- * name and parameters
* 2d sketches of shape, isometric view of shape
* 1d and 2d histograms for ff .vs. qx,qy,qz ... - 15:30 Feature #474 (Rejected): Implement functional test to run through all defined form factors
- * should compare with IsGISAXS form factors in BA
* also script is required to run IsGISAXS in batch mode and prod... - 15:23 Bug #473 (Resolved): Simulation fails at zero abundance in particle_decoration.addParticle
- 15:17 Bug #473 (Sprint): Simulation fails at zero abundance in particle_decoration.addParticle
- 15:23 Revision 9e9bf306: Protection againss zero abundance
- 15:12 Revision b4ed5326: User manual now can be compiled with cmake in standalone mode (without whole B...
- 14:02 Bug #470 (Resolved): fitting example failure
- 14:00 Revision 5306fa52: Fitting example data included in the cmake installation
- 11:37 Bug #447 (Resolved): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
- Minimum required CMake now 2.8.3
- 11:36 Revision 2a396f0d: Minimum required CMake version is increased till 2.8.3
- 11:07 Revision 5f032054: Changes in fitting manual (local minima trap section)
06 Nov 2013
- 18:02 Revision d8ca6f19: Finalizing fitting manual
- 13:38 Feature #333 (Rejected): PythonAPI: provide convertion of eigen matrix to numpy array
Lets drop this issue. For the moment we are able to read polarized output data from python, no need to try to bin...- 13:32 Documentation #448 (Resolved): Examples: prepare FitCylindersAndPrism_detailed example
- New example python/fitting/FitCylindersPrism_detailed.py with graphics showing the iteration progress
- 13:26 Revision d6fc92aa: Merge branch 'FittingManual'
- 13:26 Revision b71d37bc: Detailed fitting example with vizualization
- 12:39 Bug #473 (Archived): Simulation fails at zero abundance in particle_decoration.addParticle
- The error message does not describe the problem:...
- 11:10 Revision 14b81288: FitCylindersPrisms got interactive matplotlib graphics to display fit progress.
05 Nov 2013
- 18:19 Revision 1c85da7f: IObservable exposed to python
- 16:17 Revision 47d50b2d: Refactoring in fitting to get nicer python interface
- 14:32 Revision 1a201fc7: Merge branch 'FittingManual'
- 14:31 Revision d9bdc487: ForFactorBox fix, now DEPRECATED_NUMPY warning, Layer::setDecoration is protec...
- 12:10 Bug #470 (Sprint): fitting example failure
- 09:22 Bug #470: fitting example failure
- Refdata_fitcylinderprisms.txt is provided in the source package, but not in the binary package.
- 09:18 Bug #470 (Archived): fitting example failure
- Examples/python/fitting/ex002_FitCylindersAndPrisms/FitCylindersPrisms_advanced.py and FitCylindersPrisms.py fail be...
- 12:09 Feature #437 (Resolved): Provide OutputData with ExportToNumpy function for PythonAPI
Finally, in python we have IntensityData == OutputData<double> and couple of new functions defined
* simulation....- 12:04 Revision d0489888: New method Simulation:::getPolarizeIntensityData(i,j) for Python
- 11:51 Revision c537b618: Access to AxisDouble vector and changes in intensitydata unittest
- 11:22 Documentation #471 (Archived): Write down formalism for polarized DWBA on embedded particles
- And communicate this to E.Kentzinger.
He will provide the theory for DWBA on domains and roughness for polarized neu... - 11:15 Revision 5a6f0d24: Merge branch 'PyOutputData' into develop
- 11:07 Revision 8336f6c1: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 10:22 Support #460 (Sprint): Create git repository for user related info
04 Nov 2013
- 19:13 Revision 1bb8425c: New Python unittest for testing IntensityData from CMake, all py examples/test...
- 17:43 Bug #469 (Archived): Review form factor calculation for big particle dimensions
- In one dimension, the correct integral for a shape of 'radius' L is:
2(Si(q_2L)-Si(q_1L)) - 17:31 Feature #55 (Rejected): PythonAPI: implement python unit tests infrastructure
- No need to set up additional infrastructure. I started to use elements of Python's unittest in TestPyCore (see new in...
- 17:30 Revision b89cf8d0: Fixed dubious parametrization in FormFactorBox
- 15:34 Revision e9feab3c: AxisDouble, getIntensityData are exposed into Python
31 Oct 2013
- 15:08 Bug #468 (Archived): Make use of python interpreter to guess libpython location
- CMake can be puzzled if more then one python is present on the system.
To avoid mixing of different version of inter... - 15:04 Feature #431 (Sprint): Build: provide thisbornagain.sh to set system PATHs to the installation di...
30 Oct 2013
- 17:40 Bug #466 (Rejected): Our CMake gets confused when there are boost 1.46 and 1.48 present on the sy...
- It finds boost 1.46 and then complains, that version is too old.
Was nnoticed on Alice's ubuntu.
29 Oct 2013
- 16:44 Documentation #448 (Sprint): Examples: prepare FitCylindersAndPrism_detailed example
- 16:42 Feature #465 (Archived): Organize BornAgain mail list with subscription
- 16:41 Feature #464 (Rejected): Investigate running TeamCity build agent on Windows server
- 16:39 Documentation #449 (Sprint): Review manual's simulation python example section to conform changes...
- 16:23 Bug #447 (Sprint): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
- 16:18 Bug #463 (Archived): Provide compilation under Jülich CentOS 5.10
- Josef Heinen reported build failure on Jülich CentOS due to static version of libpython.a (thread issue)
- 16:16 Bug #462 (Archived): Provide compilation on Jülich MacOS server
- Josef Heinen observed build failure on Jülich MacOS server.
CMake gets tangled between different versions of Python ... - 16:13 Bug #461 (Archived): Provide compilation on latest MacOS Maverick
- Josef Heinen found out build failure on latest MacOS Maverick.
Apparently new MacOS clang is too strict with our code. - 11:38 Support #460 (Archived): Create git repository for user related info
- * should be protected
* kind of database of users and they requests
* among other things, will contain scripts with... - 11:34 Documentation #455 (Sprint): Add demos into Examples/python section
- 11:32 Documentation #441 (Resolved): Prepare talk for Koordinierungstreffen
- 11:32 Feature #444 (Resolved): Prepare talk for ILL
- 11:25 Documentation #459 (Archived): Review installation section
- * Describe installation on Windows if the user already has Python installed
* Recommend PyCharm
* Explain thisborna...
26 Oct 2013
- 18:15 Documentation #456 (Resolved): Prepare talk "Data Analysis in HEP" for ILL
- 18:15 Documentation #458 (Resolved): Prepare talk about Python bindings for ILL
25 Oct 2013
- 14:59 Revision f7e649cb: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 14:59 Revision e66d9a7f: Picture with number of lines of code
- 14:58 Revision 58c72b97: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 14:58 Revision 1bd36ac0: Added demos
21 Oct 2013
- 10:51 Documentation #458 (Archived): Prepare talk about Python bindings for ILL
- 10:13 Testing #457 (Resolved): Implement unit tests for form factors
19 Oct 2013
18 Oct 2013
- 11:15 Revision 839502ca: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 11:15 Revision 8466c669: Another qmake fix
- 11:03 Revision 2f0daf30: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 11:02 Revision ff13037e: Added python demos to git
- 10:59 Revision f33c1b6e: Fix for qmake
- 10:05 Revision ae0fe894: Bug fix in fitting introduced with the last refactoring fixed.
- 10:03 Documentation #455 (Archived): Add demos into Examples/python section
- Those demos which Walter has prepared for Hamburg/ILL.
With short README. - 09:39 Feature #454 (Archived): Change behavior of setParameterValue
- If there is '*' in the parameter name, then setMatchedParametersValue should be used instead of setParameterValue
Up... - 09:19 Revision b167db30: Merge branch 'FitManual'
- Conflicts:
CMakeLists.txt
Core/PythonAPI/src/FormFactorGauss.pypp.cpp - 09:13 Revision 71731a1e: Manual: gentle introduction to the data fitting
17 Oct 2013
- 14:43 Revision 3090132c: New TestToyFitting to illustrate the manual
- 11:34 Feature #450 (Resolved): Provide python function to retrieve polarized output data
- 10:06 Feature #450 (Archived): Provide python function to retrieve polarized output data
- 11:34 Revision 097bd31f: Merge branch 'python_pol_outputdata' into develop
- 11:34 Revision ed71125c: Added global function to retrieve polarized output data in python
- 09:42 Documentation #449 (Archived): Review manual's simulation python example section to conform chang...
- 09:38 Refactoring #443 (Resolved): Refactor IMinimizer for better control of minimizer option
16 Oct 2013
- 17:59 Revision 50e5e38f: Fitting example explained + lots of changes in fitting PythonAPI
- 17:51 Revision 3e41c917: Reset python & app building to defaults
- 17:47 Revision 5356e3bd: Merge branch 'mc_ff2' into develop
- 17:43 Revision 38c10873: Found Gaussian FormFactor problem: height was much bigger than layer thickness...
- 17:42 Documentation #448 (Archived): Examples: prepare FitCylindersAndPrism_detailed example
- It has to contain access to Simulated data with optimal parameters from the fit and simple matplotlib visualization
... - 13:49 Revision 969f7742: Use Gauss form factor for mesocrystal simulation
- 13:49 Revision b903250e: Add getVolume() to FormFactorGauss
- 13:49 Revision 6061c84a: Changed lattice calculations
- 13:49 Revision 85c0495c: Refactored FormFactorGauss
- 13:49 Revision c601a047: Updated Xcode project
- 10:58 Revision c30bb52c: UserManual section: associating model and reference in the fit
- 10:38 Revision 0c260094: Put back hardcoded BAVersion.h file to fix quake build
15 Oct 2013
- 17:42 Revision e8c823e1: Minimizer setting parts in User manual and corresponding refactoring (Minimize...
- 15:51 Bug #447 (Archived): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
- Add another minimum required version 2.8.10(?) or add own version of PARSE_MACRO
- 13:31 Revision bf82b22e: Adapt release script
- 13:12 Refactoring #236: multi-line comment style
- In 'modern' IDE's, the symmetric version can also be collapsed :)
- 12:59 Refactoring #236 (Backlog): multi-line comment style
- libBornAgainFit should be equipped with correct header too
- 11:44 Revision 3b3bd5ba: New method printSampleTree for python users comfort
- 11:11 Feature #446 (Archived): Repair broken Genetic minimizer after we get rid from ROOT dependency
- 11:06 Revision ba8aab07: Merge branch 'iss417' into develop
- Conflicts:
CMakeLists.txt - 11:02 Testing #445 (Archived): Implement BornAgainFit unit test infrastructure
- 11:01 Revision c6f0846c: IParameterized::setParameterValue behavior changed to the global pool
- 10:06 Feature #444 (Archived): Prepare talk for ILL
- 09:14 Refactoring #443 (Archived): Refactor IMinimizer for better control of minimizer option
14 Oct 2013
- 17:07 Revision 612408ff: Some other minor changes to the release script.
- 16:29 Documentation #439 (Resolved): Explain sample parameters paradigm in simulation examples section
- 16:28 Revision 2958ce78: Sample parameter pool is explained
- 16:23 Revision df10fcfb: Some small corrections to the release script.
- 15:41 Revision dc0c1b1a: Added menu to the release script.
11 Oct 2013
- 18:44 Revision 200a314f: Manual: fitting implementation details in BornAgain
- 18:03 Documentation #442 (Rejected): Review SoftwareDesignOverview section
Walter?
- 16:22 Documentation #441 (Archived): Prepare talk for Koordinierungstreffen
- 15:58 Documentation #440 (Resolved): Create svg plot representing minimization flow
- 13:47 Documentation #440 (Archived): Create svg plot representing minimization flow
- 15:58 Feature #438 (Resolved): Adjust existing python examples to conform PEP8 style
- 09:36 Feature #438 (Archived): Adjust existing python examples to conform PEP8 style
- 15:56 Revision 03f11a41: New plot with minimization workflow
- 13:48 Refactoring #436 (Sprint): Refactor ISample, IParameterized and ParameterPool for better access t...
- 13:47 Feature #437 (Sprint): Provide OutputData with ExportToNumpy function for PythonAPI
- 12:34 Documentation #439 (Archived): Explain sample parameters paradigm in simulation examples section
- 11:24 Revision 6d300e37: Added graphics in SampleParametersIntro.py, all other python examples modified...
10 Oct 2013
- 16:06 Feature #437 (Archived): Provide OutputData with ExportToNumpy function for PythonAPI
- This has to be discussed. We need some general approach to access OutputData in Python,
including the cases when Out... - 15:59 Feature #287 (Backlog): IntensityData campaign
- 15:57 Refactoring #436 (Archived): Refactor ISample, IParameterized and ParameterPool for better access...
- Refactor ISample, IParameterized and ParameterPool for better access to global ISample's parameter pool and natural i...
- 15:54 Feature #34: Implement different types of detector scans
This must be the part of some other activity, not OutputData- 14:59 Feature #434 (Rejected): User Requests campaign
- 14:33 Feature #434 (Rejected): User Requests campaign
- This is the issue to group different user requests
- 14:39 Feature #435 (Archived): Request: provide JFM with the python script simulating the sample_jfm1
- sample_jfm1 means two homogeneous layers with spheres 50nm at hexagonal lattice.
There will be probably other reques... - 09:43 Revision 098c64d0: New example SampleParametersIntro
09 Oct 2013
- 23:05 Documentation #432: Examples: prepare example with correlated roughness interface
- Also provide one example with just a single rough interface
Also available in: Atom