Activity

From 16 Oct 2013 to 14 Nov 2013

14 Nov 2013

09:53 Bug #497 (Archived): Access to axis of IntensityData in Python leads to the segmentation fault
The reason is unresolved ownership of the object returned by OutputData::getAxis() method pospelov

13 Nov 2013

17:49 Documentation #459 (Resolved): Review installation section
pospelov

12 Nov 2013

16:35 Documentation #496 (Rejected): Add description of the covered functionality
namely,
* list of supported approximations (DA, LMA, SSCA, etc)
* list of supported interference functions and pair...
ganeva
16:10 Documentation #455 (Resolved): Add demos into Examples/python section
README not considered necessary for now herck
15:59 Feature #493 (Resolved): Set PYTHONPATH under windows at the end of installation
pospelov
10:37 Feature #493 (Archived): Set PYTHONPATH under windows at the end of installation
pospelov
11:43 Feature #494 (Archived): Implement all IsGISAXS distribution functions
herck
09:43 Feature #310 (Resolved): Finish deb package
ganeva
09:42 Feature #310 (Sprint): Finish deb package
ganeva

11 Nov 2013

18:02 Feature #491: Provide https access to git repository
I think gitweb does not help here (rather duplicates functionality we have in redmine repository view).
I rather thi...
wuttke
16:40 Feature #491: Provide https access to git repository
potentially dangerous; needs support by Christian wuttke
16:19 Feature #491 (Sprint): Provide https access to git repository
wuttke
15:41 Feature #491 (Rejected): Provide https access to git repository
People sitting behind strict firewalls (e.g. A. Glavic) might not have access to the usual git:// repo herck
16:43 Feature #492 (Rejected): check for units
When a function is meant to be used as in
f(5*nanometer),
then
f(5)
should be explicitly forbidden.
Possib...
wuttke
14:34 Documentation #449 (Resolved): Review manual's simulation python example section to conform chang...
pospelov
13:55 Support #490 (Rejected): Provide script collecting information about user system
This script has to collect information about user system and store it in the file.
We could ask the user sent this t...
pospelov
12:44 Documentation #489 (Archived): Python docstrings
Generate appropriate docstrings, such that python IDE's can easily autocomplete and for documentation purposes. herck

08 Nov 2013

20:46 Bug #462 (Resolved): Provide compilation on Jülich MacOS server

Everything is compiling in Jülich (both CentOS and Mac servers),
if
export PATH=/usr/local/bin:$PATH
export CM...
pospelov
17:44 Bug #463 (Resolved): Provide compilation under Jülich CentOS 5.10
pospelov
15:16 Bug #468 (Resolved): Make use of python interpreter to guess libpython location
pospelov
15:06 Feature #419 (Resolved): Write deployment script which will automatize the release
ganeva
11:03 Documentation #372 (Resolved): Review fitting section
pospelov
11:02 Feature #431 (Resolved): Build: provide thisbornagain.sh to set system PATHs to the installation ...
pospelov

07 Nov 2013

18:21 Support #460: Create git repository for user related info
and use common JCNS fileserver for data exchange wuttke
14:29 Support #460 (Resolved): Create git repository for user related info
Redmine subproject created. Git repository will only be created if needed. herck
16:32 Documentation #487 (Rejected): Provide screenshots for project homepage
A screenshot section is standard for a project homepage, and for good reason: potential users want to get a first imp... wuttke
16:25 Feature #300: Investigate alternatives to Monte-Carlo computation of non-analytic form factors
For license reasons, we will not be able to copy the solution from HipGisas.
Open-source libraries that may help for...
wuttke
15:46 Feature #486 (Archived): Implement/review Spheroid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:45 Feature #485 (Archived): Implement/review Anisotropic hemi-spheroid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:45 Feature #484 (Archived): Implement/review Ellipsoid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:45 Feature #483 (Archived): Implement/review Anisotropic pyramid formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:44 Feature #482 (Archived): Implement/review Full spheroid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:44 Feature #481 (Archived): Implement/review Cybooctaedron formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:43 Feature #480 (Archived): Implement/review Cone6 formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:42 Feature #479 (Archived): Implement/review Prism6 formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:42 Feature #478 (Archived): Implement/review Tethraedron formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:41 Feature #477 (Archived): Implement/review Cone formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (get...
pospelov
15:32 Documentation #475 (Archived): Create prototype of latex (pdf) page representing form factor
* name and parameters
* 2d sketches of shape, isometric view of shape
* 1d and 2d histograms for ff .vs. qx,qy,qz ...
pospelov
15:30 Feature #474 (Rejected): Implement functional test to run through all defined form factors
* should compare with IsGISAXS form factors in BA
* also script is required to run IsGISAXS in batch mode and prod...
pospelov
15:23 Bug #473 (Resolved): Simulation fails at zero abundance in particle_decoration.addParticle
pospelov
15:17 Bug #473 (Sprint): Simulation fails at zero abundance in particle_decoration.addParticle
pospelov
14:02 Bug #470 (Resolved): fitting example failure
pospelov
11:37 Bug #447 (Resolved): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
Minimum required CMake now 2.8.3 pospelov

06 Nov 2013

13:38 Feature #333 (Rejected): PythonAPI: provide convertion of eigen matrix to numpy array

Lets drop this issue. For the moment we are able to read polarized output data from python, no need to try to bin...
pospelov
13:32 Documentation #448 (Resolved): Examples: prepare FitCylindersAndPrism_detailed example
New example python/fitting/FitCylindersPrism_detailed.py with graphics showing the iteration progress pospelov
12:39 Bug #473 (Archived): Simulation fails at zero abundance in particle_decoration.addParticle
The error message does not describe the problem:... ganeva

05 Nov 2013

12:10 Bug #470 (Sprint): fitting example failure
pospelov
09:22 Bug #470: fitting example failure
Refdata_fitcylinderprisms.txt is provided in the source package, but not in the binary package. ganeva
09:18 Bug #470 (Archived): fitting example failure
Examples/python/fitting/ex002_FitCylindersAndPrisms/FitCylindersPrisms_advanced.py and FitCylindersPrisms.py fail be... ganeva
12:09 Feature #437 (Resolved): Provide OutputData with ExportToNumpy function for PythonAPI

Finally, in python we have IntensityData == OutputData<double> and couple of new functions defined
* simulation....
pospelov
11:22 Documentation #471 (Archived): Write down formalism for polarized DWBA on embedded particles
And communicate this to E.Kentzinger.
He will provide the theory for DWBA on domains and roughness for polarized neu...
herck
10:22 Support #460 (Sprint): Create git repository for user related info
herck

04 Nov 2013

17:43 Bug #469 (Archived): Review form factor calculation for big particle dimensions
In one dimension, the correct integral for a shape of 'radius' L is:
2(Si(q_2L)-Si(q_1L))
herck
17:31 Feature #55 (Rejected): PythonAPI: implement python unit tests infrastructure
No need to set up additional infrastructure. I started to use elements of Python's unittest in TestPyCore (see new in... pospelov

31 Oct 2013

15:08 Bug #468 (Archived): Make use of python interpreter to guess libpython location
CMake can be puzzled if more then one python is present on the system.
To avoid mixing of different version of inter...
pospelov
15:04 Feature #431 (Sprint): Build: provide thisbornagain.sh to set system PATHs to the installation di...
pospelov

30 Oct 2013

17:40 Bug #466 (Rejected): Our CMake gets confused when there are boost 1.46 and 1.48 present on the sy...
It finds boost 1.46 and then complains, that version is too old.
Was nnoticed on Alice's ubuntu.
pospelov

29 Oct 2013

16:44 Documentation #448 (Sprint): Examples: prepare FitCylindersAndPrism_detailed example
pospelov
16:42 Feature #465 (Archived): Organize BornAgain mail list with subscription
pospelov
16:41 Feature #464 (Rejected): Investigate running TeamCity build agent on Windows server
pospelov
16:39 Documentation #449 (Sprint): Review manual's simulation python example section to conform changes...
pospelov
16:23 Bug #447 (Sprint): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
pospelov
16:18 Bug #463 (Archived): Provide compilation under Jülich CentOS 5.10
Josef Heinen reported build failure on Jülich CentOS due to static version of libpython.a (thread issue) pospelov
16:16 Bug #462 (Archived): Provide compilation on Jülich MacOS server
Josef Heinen observed build failure on Jülich MacOS server.
CMake gets tangled between different versions of Python ...
pospelov
16:13 Bug #461 (Archived): Provide compilation on latest MacOS Maverick
Josef Heinen found out build failure on latest MacOS Maverick.
Apparently new MacOS clang is too strict with our code.
pospelov
11:38 Support #460 (Archived): Create git repository for user related info
* should be protected
* kind of database of users and they requests
* among other things, will contain scripts with...
pospelov
11:34 Documentation #455 (Sprint): Add demos into Examples/python section
pospelov
11:32 Documentation #441 (Resolved): Prepare talk for Koordinierungstreffen
pospelov
11:32 Feature #444 (Resolved): Prepare talk for ILL
herck
11:25 Documentation #459 (Archived): Review installation section
* Describe installation on Windows if the user already has Python installed
* Recommend PyCharm
* Explain thisborna...
pospelov

26 Oct 2013

18:15 Documentation #456 (Resolved): Prepare talk "Data Analysis in HEP" for ILL
pospelov
18:15 Documentation #458 (Resolved): Prepare talk about Python bindings for ILL
pospelov

21 Oct 2013

10:51 Documentation #458 (Archived): Prepare talk about Python bindings for ILL
pospelov
10:13 Testing #457 (Resolved): Implement unit tests for form factors
celine

19 Oct 2013

11:17 Documentation #456 (Archived): Prepare talk "Data Analysis in HEP" for ILL
pospelov

18 Oct 2013

10:03 Documentation #455 (Archived): Add demos into Examples/python section
Those demos which Walter has prepared for Hamburg/ILL.
With short README.
pospelov
09:39 Feature #454 (Archived): Change behavior of setParameterValue
If there is '*' in the parameter name, then setMatchedParametersValue should be used instead of setParameterValue
Up...
pospelov

17 Oct 2013

11:34 Feature #450 (Resolved): Provide python function to retrieve polarized output data
herck
10:06 Feature #450 (Archived): Provide python function to retrieve polarized output data
herck
09:42 Documentation #449 (Archived): Review manual's simulation python example section to conform chang...
pospelov
09:38 Refactoring #443 (Resolved): Refactor IMinimizer for better control of minimizer option
pospelov

16 Oct 2013

17:42 Documentation #448 (Archived): Examples: prepare FitCylindersAndPrism_detailed example
It has to contain access to Simulated data with optimal parameters from the fit and simple matplotlib visualization
...
pospelov
 

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