Activity
From 17 Oct 2013 to 15 Nov 2013
15 Nov 2013
- 16:38 Revision c2c4af63: Fixed compile issue
- 16:31 Revision 7b9b238f: Added test_SampleGeometry() to TestMiscellaneous
- 16:17 Feature #435 (Sprint): Request: provide JFM with the python script simulating the sample_jfm1
- 16:14 Revision 3525c61f: Fixed eclipse build issue
- 15:36 Revision 4e732dc7: Adapted eclipse project settings
- 15:20 Revision 7d29f1ad: Python libraries search fix
- 15:01 Revision df439813: Python libraries patch
- 14:01 Revision e026914a: Merge branch 'master' of apps.jcns.fz-juelich.de:BornAgain
- 13:59 Revision ab81b83f: Ubuntu patch
- 13:01 Bug #470 (Archived): fitting example failure
- 13:01 Bug #473 (Archived): Simulation fails at zero abundance in particle_decoration.addParticle
- 13:01 Bug #497 (Archived): Access to axis of IntensityData in Python leads to the segmentation fault
- 12:57 Bug #497 (Resolved): Access to axis of IntensityData in Python leads to the segmentation fault
- 13:01 Feature #450 (Archived): Provide python function to retrieve polarized output data
- 13:01 Feature #438 (Archived): Adjust existing python examples to conform PEP8 style
- 13:01 Documentation #448 (Archived): Examples: prepare FitCylindersAndPrism_detailed example
- 13:01 Documentation #441 (Archived): Prepare talk for Koordinierungstreffen
- 13:01 Feature #444 (Archived): Prepare talk for ILL
- 13:01 Documentation #456 (Archived): Prepare talk "Data Analysis in HEP" for ILL
- 13:01 Documentation #458 (Archived): Prepare talk about Python bindings for ILL
- 13:01 Support #460 (Archived): Create git repository for user related info
- 13:01 Bug #462 (Archived): Provide compilation on Jülich MacOS server
- 13:01 Bug #463 (Archived): Provide compilation under Jülich CentOS 5.10
- 13:01 Bug #468 (Archived): Make use of python interpreter to guess libpython location
- 13:01 Feature #493 (Archived): Set PYTHONPATH under windows at the end of installation
- 13:01 Documentation #423 (Archived): Prepare demo for GISASXS 2013
- 13:01 Documentation #398 (Archived): default installation from tgz; direct only experts to git snapshot
- 13:01 Documentation #404 (Archived): Prepare poster for GISAXS2013 Workshop in Hamburg
- 13:01 Feature #417 (Archived): implement automatic propagation of BornAgain version number into cmake
- 13:01 Feature #419 (Archived): Write deployment script which will automatize the release
- 13:01 Feature #396 (Archived): Create deb package
- 13:01 Feature #431 (Archived): Build: provide thisbornagain.sh to set system PATHs to the installation ...
- 13:01 Bug #447 (Archived): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
- 13:01 Documentation #439 (Archived): Explain sample parameters paradigm in simulation examples section
- 13:01 Documentation #440 (Archived): Create svg plot representing minimization flow
- 13:01 Refactoring #443 (Archived): Refactor IMinimizer for better control of minimizer option
- 13:01 Documentation #449 (Archived): Review manual's simulation python example section to conform chang...
- 13:01 Documentation #455 (Archived): Add demos into Examples/python section
- 13:01 Documentation #459 (Archived): Review installation section
- 13:01 Feature #437 (Archived): Provide OutputData with ExportToNumpy function for PythonAPI
- 13:01 Documentation #372 (Archived): Review fitting section
- 12:59 Revision 99bc5c9c: Merge
- 12:59 Revision 223634c9: Release 0.9.2
- 12:59 Revision e399b1da: Merge
- 12:48 Revision f302ce45: Fix in release script
- 12:33 Revision a6a7bf9d: Fix in release script
- 11:38 Revision ddfc53db: Fix in manual and, in the release script
- 11:23 Revision 5b429a92: Fix in release script
- 11:16 Revision a6f8b88b: Fix in release script
- 10:57 Bug #499 (Sprint): Simulated formfactors sphere (for H=2R) and fullsphere are squeezed
- 10:25 Bug #499: Simulated formfactors sphere (for H=2R) and fullsphere are squeezed
- if alpha_incident is set to zero, the simulated formfactor is not squeezed.
- 10:18 Bug #499 (Archived): Simulated formfactors sphere (for H=2R) and fullsphere are squeezed
- The effect does not depend on the plotting tool. The picture is the same either for matplotlib or for ROOT (see the a...
- 10:52 Revision b4d3a816: Fix in release script
- 10:27 Revision 650e6a56: Fix in release script
- 10:21 Revision b2daec88: Fix in release script for git
14 Nov 2013
- 17:37 Revision 3b3b3a98: Fix in release script
- 15:16 Revision be34f225: Minox fix in release script
- 11:48 Revision f44da095: Corrected bug with axis ownership
- 09:53 Bug #497 (Archived): Access to axis of IntensityData in Python leads to the segmentation fault
- The reason is unresolved ownership of the object returned by OutputData::getAxis() method
13 Nov 2013
- 17:49 Documentation #459 (Resolved): Review installation section
- 17:48 Revision 9d1fc3a6: Merge branch 'PreRelease'
- 17:47 Revision b74398aa: Manual: minor typos
- 17:11 Revision c70a796e: Manual: review of fitting section
- 16:31 Revision a588cacf: manual: review of simulation section
- 15:07 Revision 33289436: Manual: review of installation section
- 13:25 Revision f25c9e89: Windows: default install dir is C, check for previous installation
- 12:32 Revision 5f315d84: CMake post install message
- 10:38 Revision 4cfc28ed: Installation destinations now managed through BornAgainConfiguration.cmake
- 09:47 Revision 4f0ea262: CMake cleanup
12 Nov 2013
- 16:35 Documentation #496 (Rejected): Add description of the covered functionality
- namely,
* list of supported approximations (DA, LMA, SSCA, etc)
* list of supported interference functions and pair... - 16:14 Revision 9dfd5b7b: Switch off debian
- 16:10 Documentation #455 (Resolved): Add demos into Examples/python section
- README not considered necessary for now
- 15:59 Feature #493 (Resolved): Set PYTHONPATH under windows at the end of installation
- 10:37 Feature #493 (Archived): Set PYTHONPATH under windows at the end of installation
- 15:56 Revision 680f0c77: Merge branch 'WinBuild' into develop
- 15:56 Revision bb82d445: Merge branch 'iss310' into develop
- 15:48 Revision a494960d: Add PYTHONPATH under windows
- 11:43 Feature #494 (Archived): Implement all IsGISAXS distribution functions
- 09:43 Feature #310 (Resolved): Finish deb package
- 09:42 Feature #310 (Sprint): Finish deb package
- 09:34 Revision a3b2eefd: Debian package works from the box now. postinst and prerm scripts in the debia...
- 09:34 Revision 98e9fc56: Merge branch 'TetrahedronPrism' into develop
- 09:33 Revision 6bf12752: Modifications of example 1 in section “Simulation” of BornAgain manual in orde...
11 Nov 2013
- 18:02 Feature #491: Provide https access to git repository
- I think gitweb does not help here (rather duplicates functionality we have in redmine repository view).
I rather thi... - 16:40 Feature #491: Provide https access to git repository
- potentially dangerous; needs support by Christian
- 16:19 Feature #491 (Sprint): Provide https access to git repository
- 15:41 Feature #491 (Rejected): Provide https access to git repository
- People sitting behind strict firewalls (e.g. A. Glavic) might not have access to the usual git:// repo
- 17:40 Revision fe8234c9: Fixed Xcode build and bug in axis initialization when only one bin is present
- 16:43 Feature #492 (Rejected): check for units
- When a function is meant to be used as in
f(5*nanometer),
then
f(5)
should be explicitly forbidden.
Possib... - 16:43 Revision f8d8c46c: Added NAMELINK_ONLY to create a symlink of .so files in the python modules dir...
- 16:11 Revision 92e5f167: Stop exposing FitSuiteParameters iterator to python to cure windows compilation
- 15:39 Revision bd74382c: Regenerated python API
- 15:33 Revision c226edff: Fix warning under windows
- 14:34 Documentation #449 (Resolved): Review manual's simulation python example section to conform chang...
- 13:55 Support #490 (Rejected): Provide script collecting information about user system
- This script has to collect information about user system and store it in the file.
We could ask the user sent this t... - 12:44 Documentation #489 (Archived): Python docstrings
- Generate appropriate docstrings, such that python IDE's can easily autocomplete and for documentation purposes.
- 10:58 Revision c94f2bd3: Examples/Demos/simul_demo_movie* were rewritten via try/except to consider the...
- 10:45 Revision 31dadd8e: Merge branch 'ManualReview' into develop
- 10:29 Revision f5bff7c5: FormFactor files added
- 10:03 Revision 22e8bc8c: revised version of BornAgain manual and corrected version of FormFactorBox.cpp...
08 Nov 2013
- 22:10 Revision bdb39249: Another bug in FormFactorBox
- 22:00 Revision 0fe88e77: Forgotten header in UnitTest
- 21:38 Revision 86171ad5: Bug in FormFactorBox
- 21:31 Revision 0c305484: No FormFactorThetraedron yet
- 20:46 Bug #462 (Resolved): Provide compilation on Jülich MacOS server
Everything is compiling in Jülich (both CentOS and Mac servers),
if
export PATH=/usr/local/bin:$PATH
export CM...- 20:38 Revision bf09ceb0: Merge branch 'JuelichBuild' into develop
- Conflicts:
App/src/TestMiscellaneous.cpp - 20:25 Revision b1dded7d: Juelich: mac server python search, again
- 19:30 Revision 0fd43eca: Juelich: mac server python search
- 19:10 Revision 1eeaa7ac: Juelich: fix in Mac python libraries search
- 17:44 Bug #463 (Resolved): Provide compilation under Jülich CentOS 5.10
- 17:18 Revision f8d296f4: Juelich: other system libraries added in the case of static python
- 16:03 Revision 1c95d8ed: Juelich: linker flag for static python
- 15:25 Revision eb6fd4cd: juelich: Fix in python search
- 15:16 Bug #468 (Resolved): Make use of python interpreter to guess libpython location
- 15:15 Revision 5a75ab6f: Python interpreter used to guess its library location
- 15:06 Feature #419 (Resolved): Write deployment script which will automatize the release
- 14:44 Revision 45e229b9: Merge branch 'ffactors' into develop
- Conflicts:
Core/FormFactors/inc/FormFactorBox.h - 14:29 Revision 05d2a246: different implementation of getVolume() in FormFactorBox and FormFactorParalle...
- explicit addition of the special case q=0 in FormFactorSphere and FormFactorPyramid
- 11:18 Revision aab01f84: cleanup in dev-tools, release.sh.in moved
- 11:03 Documentation #372 (Resolved): Review fitting section
- 11:02 Feature #431 (Resolved): Build: provide thisbornagain.sh to set system PATHs to the installation ...
- 10:53 Revision 7634fe63: Merge branch 'FittingManual'
- 10:52 Revision 906fe47d: thisbornagain.sh
07 Nov 2013
- 19:05 Revision 6ade0868: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 18:21 Support #460: Create git repository for user related info
- and use common JCNS fileserver for data exchange
- 14:29 Support #460 (Resolved): Create git repository for user related info
- Redmine subproject created. Git repository will only be created if needed.
- 16:32 Documentation #487 (Rejected): Provide screenshots for project homepage
- A screenshot section is standard for a project homepage, and for good reason: potential users want to get a first imp...
- 16:25 Feature #300: Investigate alternatives to Monte-Carlo computation of non-analytic form factors
- For license reasons, we will not be able to copy the solution from HipGisas.
Open-source libraries that may help for... - 15:46 Feature #486 (Archived): Implement/review Spheroid formfactor
- * validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu... - 15:45 Feature #485 (Archived): Implement/review Anisotropic hemi-spheroid formfactor
- * validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu... - 15:45 Feature #484 (Archived): Implement/review Ellipsoid formfactor
- * validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu... - 15:45 Feature #483 (Archived): Implement/review Anisotropic pyramid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...- 15:44 Feature #482 (Archived): Implement/review Full spheroid formfactor
- * validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu... - 15:44 Feature #481 (Archived): Implement/review Cybooctaedron formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...- 15:43 Feature #480 (Archived): Implement/review Cone6 formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...- 15:42 Feature #479 (Archived): Implement/review Prism6 formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...- 15:42 Feature #478 (Archived): Implement/review Tethraedron formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...- 15:41 Feature #477 (Archived): Implement/review Cone formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (get...- 15:32 Documentation #475 (Archived): Create prototype of latex (pdf) page representing form factor
- * name and parameters
* 2d sketches of shape, isometric view of shape
* 1d and 2d histograms for ff .vs. qx,qy,qz ... - 15:30 Feature #474 (Rejected): Implement functional test to run through all defined form factors
- * should compare with IsGISAXS form factors in BA
* also script is required to run IsGISAXS in batch mode and prod... - 15:23 Bug #473 (Resolved): Simulation fails at zero abundance in particle_decoration.addParticle
- 15:17 Bug #473 (Sprint): Simulation fails at zero abundance in particle_decoration.addParticle
- 15:23 Revision 9e9bf306: Protection againss zero abundance
- 15:12 Revision b4ed5326: User manual now can be compiled with cmake in standalone mode (without whole B...
- 14:02 Bug #470 (Resolved): fitting example failure
- 14:00 Revision 5306fa52: Fitting example data included in the cmake installation
- 11:37 Bug #447 (Resolved): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
- Minimum required CMake now 2.8.3
- 11:36 Revision 2a396f0d: Minimum required CMake version is increased till 2.8.3
- 11:07 Revision 5f032054: Changes in fitting manual (local minima trap section)
06 Nov 2013
- 18:02 Revision d8ca6f19: Finalizing fitting manual
- 13:38 Feature #333 (Rejected): PythonAPI: provide convertion of eigen matrix to numpy array
Lets drop this issue. For the moment we are able to read polarized output data from python, no need to try to bin...- 13:32 Documentation #448 (Resolved): Examples: prepare FitCylindersAndPrism_detailed example
- New example python/fitting/FitCylindersPrism_detailed.py with graphics showing the iteration progress
- 13:26 Revision d6fc92aa: Merge branch 'FittingManual'
- 13:26 Revision b71d37bc: Detailed fitting example with vizualization
- 12:39 Bug #473 (Archived): Simulation fails at zero abundance in particle_decoration.addParticle
- The error message does not describe the problem:...
- 11:10 Revision 14b81288: FitCylindersPrisms got interactive matplotlib graphics to display fit progress.
05 Nov 2013
- 18:19 Revision 1c85da7f: IObservable exposed to python
- 16:17 Revision 47d50b2d: Refactoring in fitting to get nicer python interface
- 14:32 Revision 1a201fc7: Merge branch 'FittingManual'
- 14:31 Revision d9bdc487: ForFactorBox fix, now DEPRECATED_NUMPY warning, Layer::setDecoration is protec...
- 12:10 Bug #470 (Sprint): fitting example failure
- 09:22 Bug #470: fitting example failure
- Refdata_fitcylinderprisms.txt is provided in the source package, but not in the binary package.
- 09:18 Bug #470 (Archived): fitting example failure
- Examples/python/fitting/ex002_FitCylindersAndPrisms/FitCylindersPrisms_advanced.py and FitCylindersPrisms.py fail be...
- 12:09 Feature #437 (Resolved): Provide OutputData with ExportToNumpy function for PythonAPI
Finally, in python we have IntensityData == OutputData<double> and couple of new functions defined
* simulation....- 12:04 Revision d0489888: New method Simulation:::getPolarizeIntensityData(i,j) for Python
- 11:51 Revision c537b618: Access to AxisDouble vector and changes in intensitydata unittest
- 11:22 Documentation #471 (Archived): Write down formalism for polarized DWBA on embedded particles
- And communicate this to E.Kentzinger.
He will provide the theory for DWBA on domains and roughness for polarized neu... - 11:15 Revision 5a6f0d24: Merge branch 'PyOutputData' into develop
- 11:07 Revision 8336f6c1: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 10:22 Support #460 (Sprint): Create git repository for user related info
04 Nov 2013
- 19:13 Revision 1bb8425c: New Python unittest for testing IntensityData from CMake, all py examples/test...
- 17:43 Bug #469 (Archived): Review form factor calculation for big particle dimensions
- In one dimension, the correct integral for a shape of 'radius' L is:
2(Si(q_2L)-Si(q_1L)) - 17:31 Feature #55 (Rejected): PythonAPI: implement python unit tests infrastructure
- No need to set up additional infrastructure. I started to use elements of Python's unittest in TestPyCore (see new in...
- 17:30 Revision b89cf8d0: Fixed dubious parametrization in FormFactorBox
- 15:34 Revision e9feab3c: AxisDouble, getIntensityData are exposed into Python
31 Oct 2013
- 15:08 Bug #468 (Archived): Make use of python interpreter to guess libpython location
- CMake can be puzzled if more then one python is present on the system.
To avoid mixing of different version of inter... - 15:04 Feature #431 (Sprint): Build: provide thisbornagain.sh to set system PATHs to the installation di...
30 Oct 2013
- 17:40 Bug #466 (Rejected): Our CMake gets confused when there are boost 1.46 and 1.48 present on the sy...
- It finds boost 1.46 and then complains, that version is too old.
Was nnoticed on Alice's ubuntu.
29 Oct 2013
- 16:44 Documentation #448 (Sprint): Examples: prepare FitCylindersAndPrism_detailed example
- 16:42 Feature #465 (Archived): Organize BornAgain mail list with subscription
- 16:41 Feature #464 (Rejected): Investigate running TeamCity build agent on Windows server
- 16:39 Documentation #449 (Sprint): Review manual's simulation python example section to conform changes...
- 16:23 Bug #447 (Sprint): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
- 16:18 Bug #463 (Archived): Provide compilation under Jülich CentOS 5.10
- Josef Heinen reported build failure on Jülich CentOS due to static version of libpython.a (thread issue)
- 16:16 Bug #462 (Archived): Provide compilation on Jülich MacOS server
- Josef Heinen observed build failure on Jülich MacOS server.
CMake gets tangled between different versions of Python ... - 16:13 Bug #461 (Archived): Provide compilation on latest MacOS Maverick
- Josef Heinen found out build failure on latest MacOS Maverick.
Apparently new MacOS clang is too strict with our code. - 11:38 Support #460 (Archived): Create git repository for user related info
- * should be protected
* kind of database of users and they requests
* among other things, will contain scripts with... - 11:34 Documentation #455 (Sprint): Add demos into Examples/python section
- 11:32 Documentation #441 (Resolved): Prepare talk for Koordinierungstreffen
- 11:32 Feature #444 (Resolved): Prepare talk for ILL
- 11:25 Documentation #459 (Archived): Review installation section
- * Describe installation on Windows if the user already has Python installed
* Recommend PyCharm
* Explain thisborna...
26 Oct 2013
- 18:15 Documentation #456 (Resolved): Prepare talk "Data Analysis in HEP" for ILL
- 18:15 Documentation #458 (Resolved): Prepare talk about Python bindings for ILL
25 Oct 2013
- 14:59 Revision f7e649cb: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 14:59 Revision e66d9a7f: Picture with number of lines of code
- 14:58 Revision 58c72b97: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 14:58 Revision 1bd36ac0: Added demos
21 Oct 2013
- 10:51 Documentation #458 (Archived): Prepare talk about Python bindings for ILL
- 10:13 Testing #457 (Resolved): Implement unit tests for form factors
19 Oct 2013
18 Oct 2013
- 11:15 Revision 839502ca: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 11:15 Revision 8466c669: Another qmake fix
- 11:03 Revision 2f0daf30: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
- 11:02 Revision ff13037e: Added python demos to git
- 10:59 Revision f33c1b6e: Fix for qmake
- 10:05 Revision ae0fe894: Bug fix in fitting introduced with the last refactoring fixed.
- 10:03 Documentation #455 (Archived): Add demos into Examples/python section
- Those demos which Walter has prepared for Hamburg/ILL.
With short README. - 09:39 Feature #454 (Archived): Change behavior of setParameterValue
- If there is '*' in the parameter name, then setMatchedParametersValue should be used instead of setParameterValue
Up... - 09:19 Revision b167db30: Merge branch 'FitManual'
- Conflicts:
CMakeLists.txt
Core/PythonAPI/src/FormFactorGauss.pypp.cpp - 09:13 Revision 71731a1e: Manual: gentle introduction to the data fitting
17 Oct 2013
- 14:43 Revision 3090132c: New TestToyFitting to illustrate the manual
- 11:34 Feature #450 (Resolved): Provide python function to retrieve polarized output data
- 10:06 Feature #450 (Archived): Provide python function to retrieve polarized output data
- 11:34 Revision 097bd31f: Merge branch 'python_pol_outputdata' into develop
- 11:34 Revision ed71125c: Added global function to retrieve polarized output data in python
- 09:42 Documentation #449 (Archived): Review manual's simulation python example section to conform chang...
- 09:38 Refactoring #443 (Resolved): Refactor IMinimizer for better control of minimizer option
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