Activity

From 05 Nov 2013 to 04 Dec 2013

04 Dec 2013

18:10 Revision 41b7ab27: Forgotten file
pospelov
18:09 Revision b6b71b2e: Refactored behavior of IParameterised::setParameterValue and corresponding uni...
pospelov
17:44 Revision 0c8e9fe5: Merge branch 'interference2dlattice' into develop
herck
17:34 Revision 9a011cb4: Added correct reference files for IsGISAXS06 tests after removing bug from IsG...
herck
17:15 Revision cfc9802a: C++ example is created, but must be debugged..
ganeva
17:09 Revision 6921f123: New form factor of cuboctahedron
celine
16:23 Revision fb0e01c4: AddAdded Fourier transformed 2d Voigt and Gate
herck
15:58 Revision 92900d50: Added Fourier transformed 2d Gaussian; removed strange looking denominator in ...
herck
14:10 Revision db8601b6: MaterialVisitor revised, bug in MaterialManager while redefining magnetic to n...
pospelov
13:42 Documentation #426 (Sprint): Examples: prepare C++ standalone example in Examples section
ganeva
13:41 Documentation #432 (Resolved): Examples: prepare example with correlated roughness interface
ganeva
13:41 Documentation #432 (Sprint): Examples: prepare example with correlated roughness interface
ganeva
13:38 Refactoring #266: Refactor MaterialManager

* Found out the bug in MaterialVisitor & MaterialManager behavior:
Attempt to create HomogeniousMaterial with the ...
pospelov
13:29 Revision 2e2ebcf1: Example #8 for the correlated roughness is ready.
ganeva
13:25 Feature #523 (Archived): Expose to python MSG::SetLevel
To be able to change the level of verbosity of the simulation pospelov
13:10 Revision 2069ad9b: Example for the correlated roughness
ganeva
12:50 Refactoring #522 (Sprint): Clean up in App and FunctionalTests
pospelov
10:02 Refactoring #522 (Archived): Clean up in App and FunctionalTests
* to avoid code duplication in App and to be able to visualize results of FunctionalTests
pospelov
09:59 Feature #521 (Archived): Implement polarized DWBA with cylindrical particles functional test
As in ./App --polarizedDWBA
pospelov
08:49 Feature #506 (Resolved): Refactor all tests to use new SimulationRegistry
ganeva
08:49 Feature #506 (Sprint): Refactor all tests to use new SimulationRegistry
ganeva

03 Dec 2013

18:02 Revision 7c83fd53: Composite iterator changed to const
pospelov
17:29 Revision 06b4d739: Function GetDifference is implemented.
ganeva
16:25 Revision 951fb45c: MultiLayer::clone changed to register children(layer,interfaces) in right order.
pospelov
16:08 Revision 7066fa8c: Merge branch 'iss506' into develop
The issue 506 is resolved. ganeva
16:04 Revision 33a772c7: IsGISAXS15 functional test is done, seems to be the last one..
ganeva
15:36 Revision 8c2b176e: IsGISAXS11 functional test is done, but I cannot properly check it right now.
ganeva
15:34 Revision a858c4da: Revision of SamplePrintVisitor
pospelov
15:20 Revision e96f408b: New form factor of anisotropic pyramid
celine
15:11 Revision 3ef49a9d: IsGISAXS10 functional test is done.
ganeva
14:44 Revision 2b6955da: IsGISAXS09 functional test is done.
ganeva
14:39 Revision 22295b58: Revised "accept" method usage
pospelov
14:27 Revision 6a728cd6: PythonAPI now hanbdles pure virtual method automatically, so should be save to...
pospelov
14:18 Revision 6fabe9e5: IsGISAXS08 functional test is done.
ganeva
13:28 Revision 99aec4d0: IsGISAXS07 functional test is done.
ganeva
12:41 Revision 798c34da: IsGISAXS06 functional test is finally done.
ganeva
12:37 Revision b42154d3: Added unit test for LayerRoughness
Mohammad Mahadi Hasan
09:41 Revision f42ce0fa: IsGISAXS04 functional test is done.
ganeva

02 Dec 2013

18:12 Revision 883eee8b: Missed PythonAPI
pospelov
18:12 Revision 6d71ac3a: Cleanup in ISampleVisitor, new global function VisitSampleTree
pospelov
17:16 Revision d3c48202: IsGISAXS03 functional test is done.
ganeva
17:03 Feature #435 (Resolved): Request: provide JFM with the python script simulating the sample_jfm1
pospelov
14:37 Bug #512 (Resolved): Particles' magnetic materials are not transformed
herck
14:26 Revision 4713c15c: IsGISAXS02 functional test is done.
ganeva
13:48 Revision 8988c1df: IsGISAXS01 functional test is done.
ganeva
13:46 Revision bc65cb42: Merge branch 'PoolVisitor'
pospelov
13:46 Revision 00c4dae7: PythonAPI regenerated
pospelov
13:39 Revision 78a1a1a7: IComposite::clone now pure virtual, PythonAPI updated
pospelov
13:36 Revision 2be53e68: Hierarchical visitor, part I
pospelov
13:13 Revision db4a4443: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
herck
13:13 Revision 009d96c3: Fixed functional test IsGISAXS11
herck
11:52 Feature #480 (Resolved): Implement/review Cone6 formfactor
celine
11:52 Feature #479 (Resolved): Implement/review Prism6 formfactor
celine
11:51 Feature #478 (Resolved): Implement/review Tethraedron formfactor
celine
11:51 Feature #477 (Resolved): Implement/review Cone formfactor
celine
10:47 Bug #461 (Backlog): Provide compilation on latest MacOS Maverick
pospelov
08:58 Feature #430 (Resolved): Examples: prepare example with core shell nanoparticles
ganeva
08:55 Revision 83a97fb8: Replaced EXPECT_EQ -> EXPECT_DOUBLE_EQ in FormFactorTest for volume comparison...
ganeva

29 Nov 2013

16:41 Revision ac6358c9: Repared core shell particle example after git merge failure. Once again.
ganeva
16:39 Revision 85fdbca1: Repared core shell particle example after git merge failure.
ganeva
16:26 Revision 864ce0f4: Example 7 for core shell nanoparticles is implemented.
ganeva
15:52 Revision 36433613: Fixed comparison of floats and doubles in LLData Unittest.
ganeva
15:52 Revision a997fadf: Nothing usefull is done yet.
ganeva
15:49 Revision 04af5cc1: Nothing usefull is done yet.
ganeva
15:17 Revision 9b757dc0: Regenerated python API
herck
15:10 Revision 78c9f09e: Fixed comparison of floats and doubles in LLData Unittest.
ganeva
14:42 Revision dbe50c9b: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
herck
14:42 Revision e6525cc5: updated Xcode project
herck
14:38 Revision 6520afe9: Merge branch 'FFPrism6' into develop
Conflicts:
Tests/FunctionalTests/TestCore/CMakeLists.txt
celine
14:33 Revision 47a097f9: First version of functional tests for form factors
celine
13:05 Revision 626d7d84: Missed include for auto_ptr
pospelov
11:32 Revision 8d9024ed: Fixed unit test and python API
herck
11:01 Revision e12fbef0: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
herck
11:01 Revision 2ad3dd05: Merge branch 'transfmagnmaterials' into develop
Conflicts:
Core/FormFactors/inc/FormFactorCrystal.h
Core/FormFactors/src/FormFactorCrystal.cpp
Core/Geometry/inc/I...
herck
09:59 Testing #127 (Resolved): Add LLData Unit tests
ganeva
09:28 Revision 5c367d3f: Merge branch 'iss475' into develop
Issue 475 is resolved. ganeva
09:19 Revision b8ab83fa: Merge branch 'iss127' into develop
The issue 127 is resolved. ganeva

28 Nov 2013

17:24 Revision 5a827813: It seems, that all UnitTests for LLData are implemented.
ganeva
16:04 Revision 80c6b98e: Remove transformation from FormFactorCrystal; transform Lattice and LatticeBas...
herck
12:01 Revision 745bdbe7: Update to Eigen 3.2
pospelov
12:01 Revision e1222351: Update to Eigen 3.2
pospelov

27 Nov 2013

18:09 Revision 762a7f30: Some first UnitTests for LLData, but not all yet.
ganeva
18:04 Revision 3ee679d2: Fixed small ambiguous initialization
herck
17:32 Bug #516 (Resolved): Simulation of mesocrystal differs when doing 4 vs 8 threads
It was a bug in roughness calculations due to unpropagated ThreadInfo pospelov
17:20 Revision 7bd50700: Merge branch 'ThreadBug'
pospelov
17:20 Revision 0c28f0de: Fixed error in ThreadInfo iterator for DWBA with roughness
pospelov
10:53 Feature #288 (Resolved): Provide correct implementation of tilted cylinder (and cone) formfactor ...
herck
10:53 Feature #288 (Sprint): Provide correct implementation of tilted cylinder (and cone) formfactor fo...
yes herck

26 Nov 2013

20:31 Revision 5781bd05: Adapted eclipse settings
herck
17:42 Bug #516 (Archived): Simulation of mesocrystal differs when doing 4 vs 8 threads
pospelov
17:40 Feature #515 (Rejected): Expose to python masking of intensity data to make fit along cuts
pospelov
17:38 Refactoring #303 (Resolved): Drop shared_ptr usage for BasicVector3D
pospelov
17:22 Revision 2a82f605: Bug fix in passing zero tgeoemtry transformation from the Crystal
pospelov
16:33 Revision 2de8fc59: Merge branch 'Transform' into develop
pospelov
16:33 Revision f294cd18: PythonAPI is restored after getting rid of shared_ptr
pospelov
15:55 Revision e932550c: Fix in TestMesoCrystal1
pospelov
15:31 Revision 046ea272: Make FormFactorDecoratorMaterial owner of (transformed)material; updated pytho...
herck
15:11 Revision a7f5e493: Shared_ptr for Transform has gone away
pospelov
14:37 Revision 1b3f14d2: Merge branch 'iss414' into develop
The issue 414 is resolved. ganeva
14:37 Testing #414 (Resolved): Implement functional test: polarized DWBA with zero magnetic field
ganeva
14:37 Revision 184c1b47: Walter's Polarized DWBA Zero magnetic field test for App is also working now. ...
ganeva
12:49 Revision 25e36fd3: New form factor of Tetrahedron
celine
12:48 Revision 38533c14: New form factor of Cone
celine
12:48 Revision afcc26ce: New form factor of cone6
celine
12:47 Revision 0b073d0e: New form factor of Prism6
celine
12:30 Revision 36436470: PolarizedDWBAZeroMag works also for python now.
ganeva
12:30 Feature #513 (Rejected): Composition of transformations
When a transformed particle sits in a transformed mesocrystal for example, their transformations should be composed. herck
11:17 Revision b1281158: Add transformed material to FormFactorDecoratorMaterial
herck
10:22 Revision b6a5974b: Added createTransformedMaterial to IMaterial and subclasses
herck
10:17 Revision 13ad4de9: PolarizedDWBAZeroMag functional test works for C++.
ganeva
10:15 Revision 15f3707b: Removed warning about hidden virtual in SampleMaterialVisitor
pospelov
10:15 Revision 2d6c3dcb: Number of threads propagated in meso crystal test
pospelov

25 Nov 2013

18:25 Revision 417b720d: A couple of the overseen phi_f. The Work on the PolarizedDWBAZeroMag is not ye...
ganeva
17:33 Revision 686bad71: Merge branch 'polmesotransforms' into develop
herck
17:31 Bug #512 (Archived): Particles' magnetic materials are not transformed
herck
17:11 Support #511 (Resolved): Provide example with 2 parameter fit of spheres in a hex lattice
pospelov
11:01 Support #511 (Archived): Provide example with 2 parameter fit of spheres in a hex lattice
pospelov
16:20 Bug #505 (Resolved): Investigate and possibly fix transformations for polarized mesocrystals
The transformation of the magnetic material is now taken into account for mesocrystals.
However, it would be more ef...
herck
15:45 Revision c7278337: Couple of forgotten alpha_f, phi_f and performance log update
pospelov
15:43 Revision 381b931d: Implemented transformations of interaction matrices + added this in the mesocr...
herck
15:19 Revision 96b3f92f: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
pospelov
15:19 Revision d5edc5bf: Update in performance log
pospelov
15:07 Refactoring #302 (Resolved): Return global static constants in the namespace back
ganeva
15:07 Revision 10ba6e56: Merge branch 'iss302' of git://apps.jcns.fz-juelich.de/BornAgain into develop
ganeva
14:59 Revision af7980a1: alpha_f and phi_f are moved back into static constants
ganeva
14:22 Revision 6ab9c8d8: Merge branch 'UserAPI'
pospelov
14:21 Revision 12c86417: MesoCrystal test is off, new fitting examples for spheres in a lattice and cor...
pospelov

22 Nov 2013

16:45 Documentation #475 (Resolved): Create prototype of latex (pdf) page representing form factor
ganeva
16:44 Documentation #475 (Sprint): Create prototype of latex (pdf) page representing form factor
ganeva
15:54 Testing #413 (Resolved): Repair MesoCrystal functional test
pospelov
15:52 Revision 1f71d181: Merge branch 'origin/develop'
pospelov
15:41 Bug #509 (Resolved): OutputData<T>.setAllTo(value) crashes (nullpointer) after clear()
herck
15:21 Bug #509 (Archived): OutputData<T>.setAllTo(value) crashes (nullpointer) after clear()
herck
15:41 Revision ef45f81b: Merge branch 'jfm1'
pospelov
15:41 Revision f91bfdf6: Merge branch 'OutputData.Clear' into develop
herck
15:41 Revision 3ccaa1c0: Outputdata: unit test for setAllTo() after clear() + fix
herck
15:40 Revision 0b6de4e7: MesoCrystal1 functional test switched On
pospelov
15:28 Testing #421 (Rejected): Repair Performance test
Performance test is no longer broken due to changes in file usage:
the log is now locally created/appended and durin...
herck
15:19 Feature #410 (Resolved): Review and improve on mesocrystal form factors
herck
15:08 Revision bb59d873: Fixed bug in IParameterized
herck
14:54 Revision a5cd0a39: Remove constness of SampleBuilder in the Simulation
pospelov
14:18 Revision b02564fa: Sectio formfactor pyramid was added to the formfactors chapter.
ganeva
14:16 Revision 418ead68: TestMesoCrystal1 moved in SimulationRegistry
pospelov
13:43 Revision 79acb2cf: Merge branch 'polMesoTransformed' into develop
herck
13:36 Revision ca3d3a1f: Put app building to ON in eclipse project settings
herck
13:36 Bug #508 (Archived): Pacman assymetry in peaks of meso crystal simulation
pospelov
13:02 Refactoring #507 (Archived): Wrap SampleBuilder in the shared pointer
pospelov
12:55 Feature #506 (Archived): Refactor all tests to use new SimulationRegistry

in addition
* make use of common function to calculate GetDifference to avoid code duplication
pospelov
12:52 Bug #505: Investigate and possibly fix transformations for polarized mesocrystals
The rotations are treated correctly now, except for the backtransformation of the matrix valued scattering amplitude ... herck
11:45 Revision 681873a1: Also use transformation inside FormFactorCrystal.evaluatePol
herck
11:17 Revision 67a2f1a6: Moved unpolarized transformation into FormFactorCrystal::evaluate
herck

21 Nov 2013

17:14 Revision d5fbb97b: last edition for today, but not the final one..
ganeva
16:23 Revision 33be4955: Couple of comments
pospelov
15:58 Revision a952a6ab: New edition of the formfactors chapter.
ganeva
14:39 Bug #505 (Archived): Investigate and possibly fix transformations for polarized mesocrystals
Mesocrystal creates a formfactor that includes at the top level a transformation (eg. a rotation).
It is however not...
herck
14:22 Bug #469 (Resolved): Review form factor calculation for big particle dimensions
herck
14:21 Revision c886b7fe: Merge branch 'bigff' into develop
herck
14:19 Revision 3266dd37: Added new analytic implementation for big form factors
herck
14:17 Revision 50c0ca3e: Fixed rotated mesocrystal form factors
herck
13:51 Revision 53f50512: New vesion of draft of the formfactor page + script to generate the parameter ...
ganeva

20 Nov 2013

17:02 Revision 178b2523: User manual is modified to add a draft of the formfactors list.
ganeva
13:52 Revision 29ebe337: Python script to plot the formfactors added to dev-tools/plot-ff/
ganeva

19 Nov 2013

17:33 Documentation #489 (Resolved): Python docstrings

See also discussion at http://apps.jcns.fz-juelich.de/redmine/projects/bornagain/wiki/User_API
pospelov
16:47 Revision 965b1907: Merge branch 'jfm1'
pospelov
16:46 Revision 7ea36fda: Script to run through python docstring for public API
pospelov
12:32 Bug #469: Review form factor calculation for big particle dimensions
Needed for Sabrina Disch's simulations herck
11:02 Revision 55684bf6: PythonAPI: C++ signatures are excluded from python docstring
pospelov

18 Nov 2013

15:02 Bug #499 (Resolved): Simulated formfactors sphere (for H=2R) and fullsphere are squeezed
The z-component of the k-vector in any layer was always considered to be positive. The bugfix allows also for negativ... herck
14:59 Revision 9455a822: Merge branch 'squeezedsphereff' into develop
herck
14:58 Revision 8963a294: Fixed bug in calculation of z-part of k-vector
herck
11:18 Documentation #501 (Sprint): API reference for manual
herck
11:16 Documentation #501 (Archived): API reference for manual
herck
11:14 Feature #13 (Rejected): Implement parameterized shape functions and their respective form factors
herck
11:11 Refactoring #89 (Rejected): Performance: collapse long IFormFactor chains
herck
11:10 Feature #492 (Rejected): check for units
herck
11:09 Refactoring #416 (Sprint): CHeck and fix //TODO's and //FIXME's
herck
11:06 Refactoring #302 (Sprint): Return global static constants in the namespace back
herck
11:06 Refactoring #303 (Sprint): Drop shared_ptr usage for BasicVector3D
herck
11:05 Testing #128 (Rejected): Add OutputData Unit tests
herck
11:05 Testing #127 (Sprint): Add LLData Unit tests
herck
11:03 Refactoring #236 (Rejected): multi-line comment style
herck
11:01 Refactoring #234 (Rejected): avoid templates - e.g. in integration wrapper MemberFunctionIntegrat...
herck
10:58 Feature #305 (Sprint): Implement simulation of lateral structured test sample from Stefan Mattauch
herck
10:56 Documentation #489 (Sprint): Python docstrings
herck
10:00 Documentation #489: Python docstrings

* http://www.boost.org/doc/libs/1_38_0/libs/python/doc/v2/docstring_options.html
* http://stackoverflow.com/ques...
pospelov
10:55 Feature #480 (Sprint): Implement/review Cone6 formfactor
herck
10:55 Feature #481 (Sprint): Implement/review Cybooctaedron formfactor
herck
10:55 Feature #482 (Sprint): Implement/review Full spheroid formfactor
herck
10:55 Feature #483 (Sprint): Implement/review Anisotropic pyramid formfactor
herck
10:55 Feature #484 (Sprint): Implement/review Ellipsoid formfactor
herck
10:55 Feature #485 (Sprint): Implement/review Anisotropic hemi-spheroid formfactor
herck
10:55 Feature #486 (Sprint): Implement/review Spheroid formfactor
herck
10:55 Feature #477 (Sprint): Implement/review Cone formfactor
herck
10:55 Feature #478 (Sprint): Implement/review Tethraedron formfactor
herck
10:55 Feature #479 (Sprint): Implement/review Prism6 formfactor
herck
10:32 Documentation #471 (Resolved): Write down formalism for polarized DWBA on embedded particles
herck
10:02 Feature #420 (Rejected): Refactor BornAgainCPack by removing generator's setting in separate files

This is more or less done already
pospelov
09:47 Feature #500 (Rejected): Windows installer: check presence of Python
* might be helpful
http://stackoverflow.com/questions/1446538/nsis-installer-that-checks-for-net-framework
pospelov

15 Nov 2013

16:38 Revision c2c4af63: Fixed compile issue
herck
16:31 Revision 7b9b238f: Added test_SampleGeometry() to TestMiscellaneous
herck
16:17 Feature #435 (Sprint): Request: provide JFM with the python script simulating the sample_jfm1
pospelov
16:14 Revision 3525c61f: Fixed eclipse build issue
herck
15:36 Revision 4e732dc7: Adapted eclipse project settings
herck
15:20 Revision 7d29f1ad: Python libraries search fix
pospelov
15:01 Revision df439813: Python libraries patch
pospelov
14:01 Revision e026914a: Merge branch 'master' of apps.jcns.fz-juelich.de:BornAgain
pospelov
13:59 Revision ab81b83f: Ubuntu patch
pospelov
13:01 Bug #470 (Archived): fitting example failure
pospelov
13:01 Bug #473 (Archived): Simulation fails at zero abundance in particle_decoration.addParticle
pospelov
13:01 Bug #497 (Archived): Access to axis of IntensityData in Python leads to the segmentation fault
pospelov
12:57 Bug #497 (Resolved): Access to axis of IntensityData in Python leads to the segmentation fault
pospelov
13:01 Feature #450 (Archived): Provide python function to retrieve polarized output data
pospelov
13:01 Feature #438 (Archived): Adjust existing python examples to conform PEP8 style
pospelov
13:01 Documentation #448 (Archived): Examples: prepare FitCylindersAndPrism_detailed example
pospelov
13:01 Documentation #441 (Archived): Prepare talk for Koordinierungstreffen
pospelov
13:01 Feature #444 (Archived): Prepare talk for ILL
pospelov
13:01 Documentation #456 (Archived): Prepare talk "Data Analysis in HEP" for ILL
pospelov
13:01 Documentation #458 (Archived): Prepare talk about Python bindings for ILL
pospelov
13:01 Support #460 (Archived): Create git repository for user related info
pospelov
13:01 Bug #462 (Archived): Provide compilation on Jülich MacOS server
pospelov
13:01 Bug #463 (Archived): Provide compilation under Jülich CentOS 5.10
pospelov
13:01 Bug #468 (Archived): Make use of python interpreter to guess libpython location
pospelov
13:01 Feature #493 (Archived): Set PYTHONPATH under windows at the end of installation
pospelov
13:01 Documentation #423 (Archived): Prepare demo for GISASXS 2013
pospelov
13:01 Documentation #398 (Archived): default installation from tgz; direct only experts to git snapshot
pospelov
13:01 Documentation #404 (Archived): Prepare poster for GISAXS2013 Workshop in Hamburg
pospelov
13:01 Feature #417 (Archived): implement automatic propagation of BornAgain version number into cmake
pospelov
13:01 Feature #419 (Archived): Write deployment script which will automatize the release
pospelov
13:01 Feature #396 (Archived): Create deb package
pospelov
13:01 Feature #431 (Archived): Build: provide thisbornagain.sh to set system PATHs to the installation ...
pospelov
13:01 Bug #447 (Archived): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
pospelov
13:01 Documentation #439 (Archived): Explain sample parameters paradigm in simulation examples section
pospelov
13:01 Documentation #440 (Archived): Create svg plot representing minimization flow
pospelov
13:01 Refactoring #443 (Archived): Refactor IMinimizer for better control of minimizer option
pospelov
13:01 Documentation #449 (Archived): Review manual's simulation python example section to conform chang...
pospelov
13:01 Documentation #455 (Archived): Add demos into Examples/python section
pospelov
13:01 Documentation #459 (Archived): Review installation section
pospelov
13:01 Feature #437 (Archived): Provide OutputData with ExportToNumpy function for PythonAPI
pospelov
13:01 Documentation #372 (Archived): Review fitting section
pospelov
12:59 Revision 99bc5c9c: Merge
pospelov
12:59 Revision 223634c9: Release 0.9.2
pospelov
12:59 Revision e399b1da: Merge
pospelov
12:48 Revision f302ce45: Fix in release script
pospelov
12:33 Revision a6a7bf9d: Fix in release script
pospelov
11:38 Revision ddfc53db: Fix in manual and, in the release script
pospelov
11:23 Revision 5b429a92: Fix in release script
pospelov
11:16 Revision a6f8b88b: Fix in release script
pospelov
10:57 Bug #499 (Sprint): Simulated formfactors sphere (for H=2R) and fullsphere are squeezed
herck
10:25 Bug #499: Simulated formfactors sphere (for H=2R) and fullsphere are squeezed
if alpha_incident is set to zero, the simulated formfactor is not squeezed. ganeva
10:18 Bug #499 (Archived): Simulated formfactors sphere (for H=2R) and fullsphere are squeezed
The effect does not depend on the plotting tool. The picture is the same either for matplotlib or for ROOT (see the a... ganeva
10:52 Revision b4d3a816: Fix in release script
pospelov
10:27 Revision 650e6a56: Fix in release script
pospelov
10:21 Revision b2daec88: Fix in release script for git
pospelov

14 Nov 2013

17:37 Revision 3b3b3a98: Fix in release script
pospelov
15:16 Revision be34f225: Minox fix in release script
pospelov
11:48 Revision f44da095: Corrected bug with axis ownership
pospelov
09:53 Bug #497 (Archived): Access to axis of IntensityData in Python leads to the segmentation fault
The reason is unresolved ownership of the object returned by OutputData::getAxis() method pospelov

13 Nov 2013

17:49 Documentation #459 (Resolved): Review installation section
pospelov
17:48 Revision 9d1fc3a6: Merge branch 'PreRelease'
pospelov
17:47 Revision b74398aa: Manual: minor typos
pospelov
17:11 Revision c70a796e: Manual: review of fitting section
pospelov
16:31 Revision a588cacf: manual: review of simulation section
pospelov
15:07 Revision 33289436: Manual: review of installation section
pospelov
13:25 Revision f25c9e89: Windows: default install dir is C, check for previous installation
pospelov
12:32 Revision 5f315d84: CMake post install message
pospelov
10:38 Revision 4cfc28ed: Installation destinations now managed through BornAgainConfiguration.cmake
pospelov
09:47 Revision 4f0ea262: CMake cleanup
pospelov

12 Nov 2013

16:35 Documentation #496 (Rejected): Add description of the covered functionality
namely,
* list of supported approximations (DA, LMA, SSCA, etc)
* list of supported interference functions and pair...
ganeva
16:14 Revision 9dfd5b7b: Switch off debian
pospelov
16:10 Documentation #455 (Resolved): Add demos into Examples/python section
README not considered necessary for now herck
15:59 Feature #493 (Resolved): Set PYTHONPATH under windows at the end of installation
pospelov
10:37 Feature #493 (Archived): Set PYTHONPATH under windows at the end of installation
pospelov
15:56 Revision 680f0c77: Merge branch 'WinBuild' into develop
pospelov
15:56 Revision bb82d445: Merge branch 'iss310' into develop
pospelov
15:48 Revision a494960d: Add PYTHONPATH under windows
pospelov
11:43 Feature #494 (Archived): Implement all IsGISAXS distribution functions
herck
09:43 Feature #310 (Resolved): Finish deb package
ganeva
09:42 Feature #310 (Sprint): Finish deb package
ganeva
09:34 Revision a3b2eefd: Debian package works from the box now. postinst and prerm scripts in the debia...
ganeva
09:34 Revision 98e9fc56: Merge branch 'TetrahedronPrism' into develop
celine
09:33 Revision 6bf12752: Modifications of example 1 in section “Simulation” of BornAgain manual in orde...
celine

11 Nov 2013

18:02 Feature #491: Provide https access to git repository
I think gitweb does not help here (rather duplicates functionality we have in redmine repository view).
I rather thi...
wuttke
16:40 Feature #491: Provide https access to git repository
potentially dangerous; needs support by Christian wuttke
16:19 Feature #491 (Sprint): Provide https access to git repository
wuttke
15:41 Feature #491 (Rejected): Provide https access to git repository
People sitting behind strict firewalls (e.g. A. Glavic) might not have access to the usual git:// repo herck
17:40 Revision fe8234c9: Fixed Xcode build and bug in axis initialization when only one bin is present
herck
16:43 Feature #492 (Rejected): check for units
When a function is meant to be used as in
f(5*nanometer),
then
f(5)
should be explicitly forbidden.
Possib...
wuttke
16:43 Revision f8d8c46c: Added NAMELINK_ONLY to create a symlink of .so files in the python modules dir...
ganeva
16:11 Revision 92e5f167: Stop exposing FitSuiteParameters iterator to python to cure windows compilation
pospelov
15:39 Revision bd74382c: Regenerated python API
pospelov
15:33 Revision c226edff: Fix warning under windows
pospelov
14:34 Documentation #449 (Resolved): Review manual's simulation python example section to conform chang...
pospelov
13:55 Support #490 (Rejected): Provide script collecting information about user system
This script has to collect information about user system and store it in the file.
We could ask the user sent this t...
pospelov
12:44 Documentation #489 (Archived): Python docstrings
Generate appropriate docstrings, such that python IDE's can easily autocomplete and for documentation purposes. herck
10:58 Revision c94f2bd3: Examples/Demos/simul_demo_movie* were rewritten via try/except to consider the...
ganeva
10:45 Revision 31dadd8e: Merge branch 'ManualReview' into develop
celine
10:29 Revision f5bff7c5: FormFactor files added
celine
10:03 Revision 22e8bc8c: revised version of BornAgain manual and corrected version of FormFactorBox.cpp...
celine

08 Nov 2013

22:10 Revision bdb39249: Another bug in FormFactorBox
pospelov
22:00 Revision 0fe88e77: Forgotten header in UnitTest
pospelov
21:38 Revision 86171ad5: Bug in FormFactorBox
pospelov
21:31 Revision 0c305484: No FormFactorThetraedron yet
pospelov
20:46 Bug #462 (Resolved): Provide compilation on Jülich MacOS server

Everything is compiling in Jülich (both CentOS and Mac servers),
if
export PATH=/usr/local/bin:$PATH
export CM...
pospelov
20:38 Revision bf09ceb0: Merge branch 'JuelichBuild' into develop
Conflicts:
App/src/TestMiscellaneous.cpp
pospelov
20:25 Revision b1dded7d: Juelich: mac server python search, again
pospelov
19:30 Revision 0fd43eca: Juelich: mac server python search
pospelov
19:10 Revision 1eeaa7ac: Juelich: fix in Mac python libraries search
pospelov
17:44 Bug #463 (Resolved): Provide compilation under Jülich CentOS 5.10
pospelov
17:18 Revision f8d296f4: Juelich: other system libraries added in the case of static python
pospelov
16:03 Revision 1c95d8ed: Juelich: linker flag for static python
pospelov
15:25 Revision eb6fd4cd: juelich: Fix in python search
pospelov
15:16 Bug #468 (Resolved): Make use of python interpreter to guess libpython location
pospelov
15:15 Revision 5a75ab6f: Python interpreter used to guess its library location
pospelov
15:06 Feature #419 (Resolved): Write deployment script which will automatize the release
ganeva
14:44 Revision 45e229b9: Merge branch 'ffactors' into develop
Conflicts:
Core/FormFactors/inc/FormFactorBox.h
celine
14:29 Revision 05d2a246: different implementation of getVolume() in FormFactorBox and FormFactorParalle...
explicit addition of the special case q=0 in FormFactorSphere and FormFactorPyramid celine
11:18 Revision aab01f84: cleanup in dev-tools, release.sh.in moved
pospelov
11:03 Documentation #372 (Resolved): Review fitting section
pospelov
11:02 Feature #431 (Resolved): Build: provide thisbornagain.sh to set system PATHs to the installation ...
pospelov
10:53 Revision 7634fe63: Merge branch 'FittingManual'
pospelov
10:52 Revision 906fe47d: thisbornagain.sh
pospelov

07 Nov 2013

19:05 Revision 6ade0868: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
wuttke
18:21 Support #460: Create git repository for user related info
and use common JCNS fileserver for data exchange wuttke
14:29 Support #460 (Resolved): Create git repository for user related info
Redmine subproject created. Git repository will only be created if needed. herck
16:32 Documentation #487 (Rejected): Provide screenshots for project homepage
A screenshot section is standard for a project homepage, and for good reason: potential users want to get a first imp... wuttke
16:25 Feature #300: Investigate alternatives to Monte-Carlo computation of non-analytic form factors
For license reasons, we will not be able to copy the solution from HipGisas.
Open-source libraries that may help for...
wuttke
15:46 Feature #486 (Archived): Implement/review Spheroid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:45 Feature #485 (Archived): Implement/review Anisotropic hemi-spheroid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:45 Feature #484 (Archived): Implement/review Ellipsoid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:45 Feature #483 (Archived): Implement/review Anisotropic pyramid formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:44 Feature #482 (Archived): Implement/review Full spheroid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:44 Feature #481 (Archived): Implement/review Cybooctaedron formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:43 Feature #480 (Archived): Implement/review Cone6 formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:42 Feature #479 (Archived): Implement/review Prism6 formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:42 Feature #478 (Archived): Implement/review Tethraedron formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:41 Feature #477 (Archived): Implement/review Cone formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (get...
pospelov
15:32 Documentation #475 (Archived): Create prototype of latex (pdf) page representing form factor
* name and parameters
* 2d sketches of shape, isometric view of shape
* 1d and 2d histograms for ff .vs. qx,qy,qz ...
pospelov
15:30 Feature #474 (Rejected): Implement functional test to run through all defined form factors
* should compare with IsGISAXS form factors in BA
* also script is required to run IsGISAXS in batch mode and prod...
pospelov
15:23 Bug #473 (Resolved): Simulation fails at zero abundance in particle_decoration.addParticle
pospelov
15:17 Bug #473 (Sprint): Simulation fails at zero abundance in particle_decoration.addParticle
pospelov
15:23 Revision 9e9bf306: Protection againss zero abundance
pospelov
15:12 Revision b4ed5326: User manual now can be compiled with cmake in standalone mode (without whole B...
pospelov
14:02 Bug #470 (Resolved): fitting example failure
pospelov
14:00 Revision 5306fa52: Fitting example data included in the cmake installation
pospelov
11:37 Bug #447 (Resolved): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
Minimum required CMake now 2.8.3 pospelov
11:36 Revision 2a396f0d: Minimum required CMake version is increased till 2.8.3
pospelov
11:07 Revision 5f032054: Changes in fitting manual (local minima trap section)
pospelov

06 Nov 2013

18:02 Revision d8ca6f19: Finalizing fitting manual
pospelov
13:38 Feature #333 (Rejected): PythonAPI: provide convertion of eigen matrix to numpy array

Lets drop this issue. For the moment we are able to read polarized output data from python, no need to try to bin...
pospelov
13:32 Documentation #448 (Resolved): Examples: prepare FitCylindersAndPrism_detailed example
New example python/fitting/FitCylindersPrism_detailed.py with graphics showing the iteration progress pospelov
13:26 Revision d6fc92aa: Merge branch 'FittingManual'
pospelov
13:26 Revision b71d37bc: Detailed fitting example with vizualization
pospelov
12:39 Bug #473 (Archived): Simulation fails at zero abundance in particle_decoration.addParticle
The error message does not describe the problem:... ganeva
11:10 Revision 14b81288: FitCylindersPrisms got interactive matplotlib graphics to display fit progress.
pospelov

05 Nov 2013

18:19 Revision 1c85da7f: IObservable exposed to python
pospelov
16:17 Revision 47d50b2d: Refactoring in fitting to get nicer python interface
pospelov
14:32 Revision 1a201fc7: Merge branch 'FittingManual'
pospelov
14:31 Revision d9bdc487: ForFactorBox fix, now DEPRECATED_NUMPY warning, Layer::setDecoration is protec...
pospelov
12:10 Bug #470 (Sprint): fitting example failure
pospelov
09:22 Bug #470: fitting example failure
Refdata_fitcylinderprisms.txt is provided in the source package, but not in the binary package. ganeva
09:18 Bug #470 (Archived): fitting example failure
Examples/python/fitting/ex002_FitCylindersAndPrisms/FitCylindersPrisms_advanced.py and FitCylindersPrisms.py fail be... ganeva
12:09 Feature #437 (Resolved): Provide OutputData with ExportToNumpy function for PythonAPI

Finally, in python we have IntensityData == OutputData<double> and couple of new functions defined
* simulation....
pospelov
12:04 Revision d0489888: New method Simulation:::getPolarizeIntensityData(i,j) for Python
pospelov
11:51 Revision c537b618: Access to AxisDouble vector and changes in intensitydata unittest
pospelov
11:22 Documentation #471 (Archived): Write down formalism for polarized DWBA on embedded particles
And communicate this to E.Kentzinger.
He will provide the theory for DWBA on domains and roughness for polarized neu...
herck
11:15 Revision 5a6f0d24: Merge branch 'PyOutputData' into develop
pospelov
11:07 Revision 8336f6c1: Merge branch 'develop' of apps.jcns.fz-juelich.de:BornAgain into develop
pospelov
10:22 Support #460 (Sprint): Create git repository for user related info
herck
 

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