Activity

From 07 Nov 2013 to 06 Dec 2013

06 Dec 2013

14:51 Feature #494 (Resolved): Implement all IsGISAXS distribution functions
Two types of distribution functions were not implemented, because both give rise to negative intensities when used in... herck
13:32 Testing #524 (Sprint): Produce a functional test for the layer with roughness
ganeva
13:32 Testing #524 (Archived): Produce a functional test for the layer with roughness
Produce a functional test for the layer with roughness to compare results of BornAgain simulation with IsGISAXS. ganeva
13:03 Documentation #426 (Resolved): Examples: prepare C++ standalone example in Examples section
ganeva

05 Dec 2013

10:07 Feature #454 (Resolved): Change behavior of setParameterValue
pospelov
10:07 Feature #454 (Sprint): Change behavior of setParameterValue
pospelov
10:04 Refactoring #380 (Rejected): Get rid from multiple inheritance ICloneable, IParameterized
pospelov
10:03 Refactoring #436 (Resolved): Refactor ISample, IParameterized and ParameterPool for better access...
pospelov

04 Dec 2013

13:42 Documentation #426 (Sprint): Examples: prepare C++ standalone example in Examples section
ganeva
13:41 Documentation #432 (Resolved): Examples: prepare example with correlated roughness interface
ganeva
13:41 Documentation #432 (Sprint): Examples: prepare example with correlated roughness interface
ganeva
13:38 Refactoring #266: Refactor MaterialManager

* Found out the bug in MaterialVisitor & MaterialManager behavior:
Attempt to create HomogeniousMaterial with the ...
pospelov
13:25 Feature #523 (Archived): Expose to python MSG::SetLevel
To be able to change the level of verbosity of the simulation pospelov
12:50 Refactoring #522 (Sprint): Clean up in App and FunctionalTests
pospelov
10:02 Refactoring #522 (Archived): Clean up in App and FunctionalTests
* to avoid code duplication in App and to be able to visualize results of FunctionalTests
pospelov
09:59 Feature #521 (Archived): Implement polarized DWBA with cylindrical particles functional test
As in ./App --polarizedDWBA
pospelov
08:49 Feature #506 (Resolved): Refactor all tests to use new SimulationRegistry
ganeva
08:49 Feature #506 (Sprint): Refactor all tests to use new SimulationRegistry
ganeva

02 Dec 2013

17:03 Feature #435 (Resolved): Request: provide JFM with the python script simulating the sample_jfm1
pospelov
14:37 Bug #512 (Resolved): Particles' magnetic materials are not transformed
herck
11:52 Feature #480 (Resolved): Implement/review Cone6 formfactor
celine
11:52 Feature #479 (Resolved): Implement/review Prism6 formfactor
celine
11:51 Feature #478 (Resolved): Implement/review Tethraedron formfactor
celine
11:51 Feature #477 (Resolved): Implement/review Cone formfactor
celine
10:47 Bug #461 (Backlog): Provide compilation on latest MacOS Maverick
pospelov
08:58 Feature #430 (Resolved): Examples: prepare example with core shell nanoparticles
ganeva

29 Nov 2013

09:59 Testing #127 (Resolved): Add LLData Unit tests
ganeva

27 Nov 2013

17:32 Bug #516 (Resolved): Simulation of mesocrystal differs when doing 4 vs 8 threads
It was a bug in roughness calculations due to unpropagated ThreadInfo pospelov
10:53 Feature #288 (Resolved): Provide correct implementation of tilted cylinder (and cone) formfactor ...
herck
10:53 Feature #288 (Sprint): Provide correct implementation of tilted cylinder (and cone) formfactor fo...
yes herck

26 Nov 2013

17:42 Bug #516 (Archived): Simulation of mesocrystal differs when doing 4 vs 8 threads
pospelov
17:40 Feature #515 (Rejected): Expose to python masking of intensity data to make fit along cuts
pospelov
17:38 Refactoring #303 (Resolved): Drop shared_ptr usage for BasicVector3D
pospelov
14:37 Testing #414 (Resolved): Implement functional test: polarized DWBA with zero magnetic field
ganeva
12:30 Feature #513 (Rejected): Composition of transformations
When a transformed particle sits in a transformed mesocrystal for example, their transformations should be composed. herck

25 Nov 2013

17:31 Bug #512 (Archived): Particles' magnetic materials are not transformed
herck
17:11 Support #511 (Resolved): Provide example with 2 parameter fit of spheres in a hex lattice
pospelov
11:01 Support #511 (Archived): Provide example with 2 parameter fit of spheres in a hex lattice
pospelov
16:20 Bug #505 (Resolved): Investigate and possibly fix transformations for polarized mesocrystals
The transformation of the magnetic material is now taken into account for mesocrystals.
However, it would be more ef...
herck
15:07 Refactoring #302 (Resolved): Return global static constants in the namespace back
ganeva

22 Nov 2013

16:45 Documentation #475 (Resolved): Create prototype of latex (pdf) page representing form factor
ganeva
16:44 Documentation #475 (Sprint): Create prototype of latex (pdf) page representing form factor
ganeva
15:54 Testing #413 (Resolved): Repair MesoCrystal functional test
pospelov
15:41 Bug #509 (Resolved): OutputData<T>.setAllTo(value) crashes (nullpointer) after clear()
herck
15:21 Bug #509 (Archived): OutputData<T>.setAllTo(value) crashes (nullpointer) after clear()
herck
15:28 Testing #421 (Rejected): Repair Performance test
Performance test is no longer broken due to changes in file usage:
the log is now locally created/appended and durin...
herck
15:19 Feature #410 (Resolved): Review and improve on mesocrystal form factors
herck
13:36 Bug #508 (Archived): Pacman assymetry in peaks of meso crystal simulation
pospelov
13:02 Refactoring #507 (Archived): Wrap SampleBuilder in the shared pointer
pospelov
12:55 Feature #506 (Archived): Refactor all tests to use new SimulationRegistry

in addition
* make use of common function to calculate GetDifference to avoid code duplication
pospelov
12:52 Bug #505: Investigate and possibly fix transformations for polarized mesocrystals
The rotations are treated correctly now, except for the backtransformation of the matrix valued scattering amplitude ... herck

21 Nov 2013

14:39 Bug #505 (Archived): Investigate and possibly fix transformations for polarized mesocrystals
Mesocrystal creates a formfactor that includes at the top level a transformation (eg. a rotation).
It is however not...
herck
14:22 Bug #469 (Resolved): Review form factor calculation for big particle dimensions
herck

19 Nov 2013

17:33 Documentation #489 (Resolved): Python docstrings

See also discussion at http://apps.jcns.fz-juelich.de/redmine/projects/bornagain/wiki/User_API
pospelov
12:32 Bug #469: Review form factor calculation for big particle dimensions
Needed for Sabrina Disch's simulations herck

18 Nov 2013

15:02 Bug #499 (Resolved): Simulated formfactors sphere (for H=2R) and fullsphere are squeezed
The z-component of the k-vector in any layer was always considered to be positive. The bugfix allows also for negativ... herck
11:18 Documentation #501 (Sprint): API reference for manual
herck
11:16 Documentation #501 (Archived): API reference for manual
herck
11:14 Feature #13 (Rejected): Implement parameterized shape functions and their respective form factors
herck
11:11 Refactoring #89 (Rejected): Performance: collapse long IFormFactor chains
herck
11:10 Feature #492 (Rejected): check for units
herck
11:09 Refactoring #416 (Sprint): CHeck and fix //TODO's and //FIXME's
herck
11:06 Refactoring #302 (Sprint): Return global static constants in the namespace back
herck
11:06 Refactoring #303 (Sprint): Drop shared_ptr usage for BasicVector3D
herck
11:05 Testing #128 (Rejected): Add OutputData Unit tests
herck
11:05 Testing #127 (Sprint): Add LLData Unit tests
herck
11:03 Refactoring #236 (Rejected): multi-line comment style
herck
11:01 Refactoring #234 (Rejected): avoid templates - e.g. in integration wrapper MemberFunctionIntegrat...
herck
10:58 Feature #305 (Sprint): Implement simulation of lateral structured test sample from Stefan Mattauch
herck
10:56 Documentation #489 (Sprint): Python docstrings
herck
10:00 Documentation #489: Python docstrings

* http://www.boost.org/doc/libs/1_38_0/libs/python/doc/v2/docstring_options.html
* http://stackoverflow.com/ques...
pospelov
10:55 Feature #480 (Sprint): Implement/review Cone6 formfactor
herck
10:55 Feature #481 (Sprint): Implement/review Cybooctaedron formfactor
herck
10:55 Feature #482 (Sprint): Implement/review Full spheroid formfactor
herck
10:55 Feature #483 (Sprint): Implement/review Anisotropic pyramid formfactor
herck
10:55 Feature #484 (Sprint): Implement/review Ellipsoid formfactor
herck
10:55 Feature #485 (Sprint): Implement/review Anisotropic hemi-spheroid formfactor
herck
10:55 Feature #486 (Sprint): Implement/review Spheroid formfactor
herck
10:55 Feature #477 (Sprint): Implement/review Cone formfactor
herck
10:55 Feature #478 (Sprint): Implement/review Tethraedron formfactor
herck
10:55 Feature #479 (Sprint): Implement/review Prism6 formfactor
herck
10:32 Documentation #471 (Resolved): Write down formalism for polarized DWBA on embedded particles
herck
10:02 Feature #420 (Rejected): Refactor BornAgainCPack by removing generator's setting in separate files

This is more or less done already
pospelov
09:47 Feature #500 (Rejected): Windows installer: check presence of Python
* might be helpful
http://stackoverflow.com/questions/1446538/nsis-installer-that-checks-for-net-framework
pospelov

15 Nov 2013

16:17 Feature #435 (Sprint): Request: provide JFM with the python script simulating the sample_jfm1
pospelov
13:01 Bug #470 (Archived): fitting example failure
pospelov
13:01 Bug #473 (Archived): Simulation fails at zero abundance in particle_decoration.addParticle
pospelov
13:01 Bug #497 (Archived): Access to axis of IntensityData in Python leads to the segmentation fault
pospelov
12:57 Bug #497 (Resolved): Access to axis of IntensityData in Python leads to the segmentation fault
pospelov
13:01 Feature #438 (Archived): Adjust existing python examples to conform PEP8 style
pospelov
13:01 Documentation #441 (Archived): Prepare talk for Koordinierungstreffen
pospelov
13:01 Feature #444 (Archived): Prepare talk for ILL
pospelov
13:01 Documentation #448 (Archived): Examples: prepare FitCylindersAndPrism_detailed example
pospelov
13:01 Feature #450 (Archived): Provide python function to retrieve polarized output data
pospelov
13:01 Documentation #456 (Archived): Prepare talk "Data Analysis in HEP" for ILL
pospelov
13:01 Documentation #458 (Archived): Prepare talk about Python bindings for ILL
pospelov
13:01 Support #460 (Archived): Create git repository for user related info
pospelov
13:01 Documentation #423 (Archived): Prepare demo for GISASXS 2013
pospelov
13:01 Bug #462 (Archived): Provide compilation on Jülich MacOS server
pospelov
13:01 Bug #463 (Archived): Provide compilation under Jülich CentOS 5.10
pospelov
13:01 Bug #468 (Archived): Make use of python interpreter to guess libpython location
pospelov
13:01 Feature #493 (Archived): Set PYTHONPATH under windows at the end of installation
pospelov
13:01 Feature #396 (Archived): Create deb package
pospelov
13:01 Documentation #398 (Archived): default installation from tgz; direct only experts to git snapshot
pospelov
13:01 Documentation #404 (Archived): Prepare poster for GISAXS2013 Workshop in Hamburg
pospelov
13:01 Feature #417 (Archived): implement automatic propagation of BornAgain version number into cmake
pospelov
13:01 Feature #419 (Archived): Write deployment script which will automatize the release
pospelov
13:01 Feature #431 (Archived): Build: provide thisbornagain.sh to set system PATHs to the installation ...
pospelov
13:01 Bug #447 (Archived): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
pospelov
13:01 Documentation #439 (Archived): Explain sample parameters paradigm in simulation examples section
pospelov
13:01 Documentation #440 (Archived): Create svg plot representing minimization flow
pospelov
13:01 Refactoring #443 (Archived): Refactor IMinimizer for better control of minimizer option
pospelov
13:01 Documentation #449 (Archived): Review manual's simulation python example section to conform chang...
pospelov
13:01 Documentation #455 (Archived): Add demos into Examples/python section
pospelov
13:01 Documentation #459 (Archived): Review installation section
pospelov
13:01 Documentation #372 (Archived): Review fitting section
pospelov
13:01 Feature #437 (Archived): Provide OutputData with ExportToNumpy function for PythonAPI
pospelov
10:57 Bug #499 (Sprint): Simulated formfactors sphere (for H=2R) and fullsphere are squeezed
herck
10:25 Bug #499: Simulated formfactors sphere (for H=2R) and fullsphere are squeezed
if alpha_incident is set to zero, the simulated formfactor is not squeezed. ganeva
10:18 Bug #499 (Archived): Simulated formfactors sphere (for H=2R) and fullsphere are squeezed
The effect does not depend on the plotting tool. The picture is the same either for matplotlib or for ROOT (see the a... ganeva

14 Nov 2013

09:53 Bug #497 (Archived): Access to axis of IntensityData in Python leads to the segmentation fault
The reason is unresolved ownership of the object returned by OutputData::getAxis() method pospelov

13 Nov 2013

17:49 Documentation #459 (Resolved): Review installation section
pospelov

12 Nov 2013

16:35 Documentation #496 (Rejected): Add description of the covered functionality
namely,
* list of supported approximations (DA, LMA, SSCA, etc)
* list of supported interference functions and pair...
ganeva
16:10 Documentation #455 (Resolved): Add demos into Examples/python section
README not considered necessary for now herck
15:59 Feature #493 (Resolved): Set PYTHONPATH under windows at the end of installation
pospelov
10:37 Feature #493 (Archived): Set PYTHONPATH under windows at the end of installation
pospelov
11:43 Feature #494 (Archived): Implement all IsGISAXS distribution functions
herck
09:43 Feature #310 (Resolved): Finish deb package
ganeva
09:42 Feature #310 (Sprint): Finish deb package
ganeva

11 Nov 2013

18:02 Feature #491: Provide https access to git repository
I think gitweb does not help here (rather duplicates functionality we have in redmine repository view).
I rather thi...
wuttke
16:40 Feature #491: Provide https access to git repository
potentially dangerous; needs support by Christian wuttke
16:19 Feature #491 (Sprint): Provide https access to git repository
wuttke
15:41 Feature #491 (Rejected): Provide https access to git repository
People sitting behind strict firewalls (e.g. A. Glavic) might not have access to the usual git:// repo herck
16:43 Feature #492 (Rejected): check for units
When a function is meant to be used as in
f(5*nanometer),
then
f(5)
should be explicitly forbidden.
Possib...
wuttke
14:34 Documentation #449 (Resolved): Review manual's simulation python example section to conform chang...
pospelov
13:55 Support #490 (Rejected): Provide script collecting information about user system
This script has to collect information about user system and store it in the file.
We could ask the user sent this t...
pospelov
12:44 Documentation #489 (Archived): Python docstrings
Generate appropriate docstrings, such that python IDE's can easily autocomplete and for documentation purposes. herck

08 Nov 2013

20:46 Bug #462 (Resolved): Provide compilation on Jülich MacOS server

Everything is compiling in Jülich (both CentOS and Mac servers),
if
export PATH=/usr/local/bin:$PATH
export CM...
pospelov
17:44 Bug #463 (Resolved): Provide compilation under Jülich CentOS 5.10
pospelov
15:16 Bug #468 (Resolved): Make use of python interpreter to guess libpython location
pospelov
15:06 Feature #419 (Resolved): Write deployment script which will automatize the release
ganeva
11:03 Documentation #372 (Resolved): Review fitting section
pospelov
11:02 Feature #431 (Resolved): Build: provide thisbornagain.sh to set system PATHs to the installation ...
pospelov

07 Nov 2013

18:21 Support #460: Create git repository for user related info
and use common JCNS fileserver for data exchange wuttke
14:29 Support #460 (Resolved): Create git repository for user related info
Redmine subproject created. Git repository will only be created if needed. herck
16:32 Documentation #487 (Rejected): Provide screenshots for project homepage
A screenshot section is standard for a project homepage, and for good reason: potential users want to get a first imp... wuttke
16:25 Feature #300: Investigate alternatives to Monte-Carlo computation of non-analytic form factors
For license reasons, we will not be able to copy the solution from HipGisas.
Open-source libraries that may help for...
wuttke
15:46 Feature #486 (Archived): Implement/review Spheroid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:45 Feature #485 (Archived): Implement/review Anisotropic hemi-spheroid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:45 Feature #484 (Archived): Implement/review Ellipsoid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:45 Feature #483 (Archived): Implement/review Anisotropic pyramid formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:44 Feature #482 (Archived): Implement/review Full spheroid formfactor
* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVolu...
pospelov
15:44 Feature #481 (Archived): Implement/review Cybooctaedron formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:43 Feature #480 (Archived): Implement/review Cone6 formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:42 Feature #479 (Archived): Implement/review Prism6 formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:42 Feature #478 (Archived): Implement/review Tethraedron formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (getVo...
pospelov
15:41 Feature #477 (Archived): Implement/review Cone formfactor

* validation of formula
* check for complex qx, qy
* comparison with IsGISAXS
* integration in UnitTests (get...
pospelov
15:32 Documentation #475 (Archived): Create prototype of latex (pdf) page representing form factor
* name and parameters
* 2d sketches of shape, isometric view of shape
* 1d and 2d histograms for ff .vs. qx,qy,qz ...
pospelov
15:30 Feature #474 (Rejected): Implement functional test to run through all defined form factors
* should compare with IsGISAXS form factors in BA
* also script is required to run IsGISAXS in batch mode and prod...
pospelov
15:23 Bug #473 (Resolved): Simulation fails at zero abundance in particle_decoration.addParticle
pospelov
15:17 Bug #473 (Sprint): Simulation fails at zero abundance in particle_decoration.addParticle
pospelov
14:02 Bug #470 (Resolved): fitting example failure
pospelov
11:37 Bug #447 (Resolved): Our minimum required cmake version 2.8.0 doesn't contain PARSE_MACRO
Minimum required CMake now 2.8.3 pospelov
 

Also available in: Atom