Activity

From 10 Sep 2015 to 09 Oct 2015

09 Oct 2015

16:35 Revision e0ea3544: Removed alpha/phi min/max from SimulationElement
herck
16:29 Documentation #1181 (Resolved): Drupal: provide fitting example along slices
pospelov
16:28 Revision 3be8d110: Relocation of fit examples
pospelov
16:19 Revision 625ee72b: Merge branch 'FitWithMasks' into develop
pospelov
16:19 Revision 165aed83: FitAlongSlices example finally.
pospelov
15:36 Revision 2d122ca6: New NumpyUtils to return vector of doubles as Numpy array
pospelov
15:33 Revision 65f59b6e: Fixed bug from previous commit
herck
13:58 Revision b7ccc515: Provided conversion from kvector_t to cvector_t; forced use of getMeanQ() in I...
herck
11:33 Bug #1210 (Rejected): GSLLMA minimizer sometimes doesn't respect fit parameter limits attribute

In FitSpheresInHexLattice_builder.py example setting of minimizer to...
pospelov
10:50 Revision 5307c20e: Summation of two histograms, all tests are working
pospelov
10:07 Revision f6ccbbbb: Some beautification in FitStrategies print out.
pospelov
10:07 Bug #811 (Rejected): FitSuite's PrintObserver reports wrong number of iterations for multiple str...
So what, it's just a feature. Rejecting... pospelov

08 Oct 2015

18:29 Revision 0a8d6376: Fit strategy adjust minimizer repaired, example is working.
pospelov
17:01 Revision 998405e0: Cleanup of IInterferenceFunctionStrategy::evaluate
herck
16:53 Revision 64697950: Only use a single k_f value inside the evaluation of form factors (not two lim...
herck
15:58 Revision 10a1efb0: FitWithMasks example repaired
pospelov
15:51 Revision 9420fa71: Two fit examples fixed
pospelov
14:50 Revision fbc0047b: Renaming in IntensityDataiOFactory
pospelov
14:17 Revision f81896aa: Replace parameter of IFormFactor::evaluatePol with WavevectorInfo
herck
14:00 Revision b24acbc7: WavevectorInfo: made members private
herck
11:42 Revision 6fd2ed5d: Extracted WavevectorInfo into its own header file
herck
11:32 Revision d4fd5870: Replace parameter of IFormFactor::evaluate with WavevectorInfo
herck
10:50 Revision 91cb8daf: Compilation fix for MacOS
pospelov

06 Oct 2015

10:28 Support #1199 (New): Consider implementation of partial structure factor

Suggestion from Marvin Berlinghof
And I have some feature recommendations:
Are you thinking about enabling part...
pospelov
10:25 Bug #1198 (Archived): GUI: fix simulation for particle distributions and negative z coordinate

From Marvin Berlinghof
I think I found a small bug in the GUI:
if you have buried particles in a layer, let's s...
pospelov

02 Oct 2015

18:10 Revision 3695a87b: Improvement on histogram/FitSuite interface, most of functional tests are work...
pospelov
14:06 Revision e945c61a: New convenience methods in Histograms to get min,max over bin content
pospelov
11:41 Revision b230db50: GIASSimulation now able to return IHistogram
pospelov

01 Oct 2015

16:19 Revision 62dc1b46: Added comment
herck
16:18 Revision 8004db1a: Added class WavevectorInfo to hold all information needed for form factor calc...
herck
15:58 Refactoring #1064: Get rid of "pylab" in Python scripts

I take this, it fits refactoring I'm doing now in python examples (related to the IntensityData and Fitting API cha...
pospelov
15:56 Feature #1099 (Resolved): Repair fitting with masks
pospelov
15:55 Revision 19e900f0: Cleanup in ChiSquaredModule
pospelov
15:18 Revision b0d17ca1: Code cleanup in FitKernel
pospelov
15:02 Revision 1dfe7109: Removed unused parameters alpha_bin and phi_bin in IFormFactor::evaluatePol
herck
14:33 Revision ce8b8fc9: Removed unused parameter alpha_bin in IFormFactor::evaluate
herck
14:19 Revision 09b67ba1: Refactoring in IObserver's
pospelov
14:14 Revision f6c5121e: Temporary implementation for SimulationElement::getMeanKF()
herck
11:44 Revision 47d7b6f8: Fitting functionality is splitted between FitKernel (machinery) and FitSuite (...
pospelov
09:36 Revision 2671b502: Before starting deep FitSuite refactoring
pospelov

30 Sep 2015

17:55 Revision 4a107563: Obsolete code removed from FitSuiteObjects
pospelov
17:22 Revision 1c25e2ba: Use kvector for interference functions (no complex vector needed, since only t...
herck
17:08 Revision 27eaa6bb: FitObject refactored to get rid from ChiSquared module
pospelov
16:15 Revision 1b7cf8d0: Code cleanup
herck
15:59 Revision 714007cc: Refactoring in FitObjects
pospelov
15:41 Revision e1860224: Move calculation of integration factor out of IInterferenceFunctionStrategy (m...
herck
14:46 Revision a684c8e0: Remove default constructor of SimulationElement
herck
14:30 Revision 6769893d: Include IPixelMap inside SimulationElement
herck
14:30 Revision 0d2bd817: Code cleanup
herck
14:14 Revision 4e910cc2: Added AngularPixelMap
herck
13:48 Revision ee40da93: Move generation of SimulationElement vector to Detector
herck
13:04 Revision cd26e767: First working version of Gradient minimizers with new FitElement.
pospelov
11:31 Revision c88f0c48: Added IPixelMap as an interface for integrating over a pixel
herck
11:09 Revision ea3154c8: Removed obsolete IFormFactorBornSeparable
herck
11:09 Revision 101bb638: typedef is moved out of anonymous namespace to treat compilation error under o...
pospelov
11:09 Revision 4e7ffbca: Missed include for our picky build server
pospelov
10:58 Revision 27f99c4f: Missed include for our picky build server
pospelov
10:50 Revision 16eb391e: typedef is moved out of anonymous namespace to treat compilation error under o...
pospelov
10:47 Revision 16dfd44a: Vector of FitElement is introduced with the idea to refactor ChiSquaredModule
pospelov

29 Sep 2015

20:13 Revision abe8ed74: On the way to refactoring FitSuite
pospelov
14:24 Revision c87b779e: Removed obsolete IFormFactorBornSeparable
herck
13:42 Revision e8d6a11c: Updates in PythonAPI
pospelov
13:35 Revision 7f6a635c: Merge branch 'FitWithMasks' into develop
Conflicts:
Core/PythonAPI/src/PythonModule.cpp
pospelov
13:33 Revision 51529b7b: FitStrategyAdjustData is abandoned and removed
pospelov
13:25 Revision f168e309: Masks are propagated in ChiSquared module
pospelov
12:32 Revision 4fd1a3db: SimulationElement reverted to old implementation (no index on board).
pospelov
11:05 Revision b97c1020: PythonAPI for masks now is working
pospelov

28 Sep 2015

17:21 Revision 176713dd: Masks are added to the detector
pospelov
14:48 Revision caf6c2af: Vertical and horizontal line masks
pospelov
14:31 Revision 1e7462f1: Line mask and unit tests.
pospelov
13:22 Revision e33ea2a1: Ellipse shape and unit tests.
pospelov
12:33 Revision d26d4677: Rectangle mask and tests
pospelov
11:19 Revision 04ff90e6: New constructor for polygon shape and tests.
pospelov
10:50 Revision 4be76d29: DetectorMask unit tests
pospelov

25 Sep 2015

16:31 Revision 1e0f36b7: First implementation of the detector mask
pospelov
14:13 Feature #1184 (Backlog): Implement transformation to q-space for intensity image
A possibility would be to plot lines of constant qy/qz on top of the planar detector image herck
13:50 Revision 0aad0c95: 2D polygon shape and corresponding unit tests.
pospelov
13:20 Bug #1083 (Resolved): Trivial MultiLayer samples (no roughness, no particles) cause simulation cr...
herck
13:08 Revision dab661f9: Merge branch 'mlemptybug' into develop
herck
13:08 Revision e09863f4: Fix bug: empty multilayer (no roughness or particles) should also simulate (bu...
herck
12:48 Bug #1173 (Resolved): Revise ParticleDistribution base class
herck
12:47 Revision 722451de: Merge branch 'partdist' into develop
herck
12:47 Revision a1866bf8: Regenerate python API
herck
11:40 Revision 90292729: Moved ParticleDistribution to IAbstractParticle
herck

24 Sep 2015

17:34 Refactoring #619 (Resolved): Masked simulation doesn't use all threads all the time

Was easy to fix with SimulationElement and first masking implementation
pospelov
17:28 Revision 120aac55: Merge branch 'DetectorMask' into develop
pospelov
17:27 Revision 75b8edf3: First implementation of masking in GISASSimulation (naive but working)
pospelov
16:36 Revision c6b92470: Changes in OutputData to compare shapes of mixed type objects.
pospelov

23 Sep 2015

18:02 Revision e4076cc5: Yet another convenience function for OutputData, and tests
pospelov
17:55 Bug #1136 (Resolved): Numerical instability at phi_f=0 on MacOS for Pyramid based form factors
herck
17:43 Revision c8ed7568: Fix sign error and removed insignificant term
herck
17:14 Revision c08c3904: Merge branch 'pyramidff' into develop
herck
17:13 Revision 79825ae7: Updates formulas of (anisotropic) pyramid form factor in user manual
herck
16:37 Revision e951e224: DetectorParameters class are removed to simplify detector creation
pospelov
14:58 Feature #922 (Resolved): Add slicing to IntensityDataFunctions
Added inside Histogram1D and 2D pospelov
14:57 Revision 65939633: Update in performance file
pospelov
14:49 Feature #948 (Resolved): Implement new IntensityData object with improved usability

Two new classes are available: Histogram1D and Histogram2D. See code examples
Suggestions on API are welcome.
...
pospelov
14:42 Revision 4d7e702c: Merge branch 'IntensityDataObject' into develop
pospelov
14:42 Revision 484e9ae3: Fix in functional test to correct for rot90 array
pospelov
14:38 Revision 285b0aa1: Removed rot90 from all user examples
pospelov
14:14 Revision 3d11b212: Additional methods for histograms to find global bins, unit tests.
pospelov
13:16 Revision f0e3b548: Refactoring in Histogram 1D and 2D api
pospelov
11:30 Revision ff87d490: Implemented singular cases for anisotropic pyramid form factor
herck

22 Sep 2015

18:01 Revision c79ac395: Array rotation by 90. degrees in OutputData.getArray
pospelov
16:22 Revision 7ec53f9b: Replaced reference file with more accurate one for anisotropic pyramid
herck
15:57 Revision 23bca2bb: Refactor anisotropic pyramid form factor (general case)
herck
14:07 Revision 0a38d7c3: More unit tests for histograms
pospelov
09:36 Revision 7652138e: FormFactorAnisoPyramid: added initialization checks
herck

21 Sep 2015

17:42 Revision 53d5542c: Functional tests for Histogram 1D and 2D.
pospelov
16:54 Feature #1184 (Sprint): Implement transformation to q-space for intensity image
pospelov
11:50 Revision b41dfd5e: Fix pyramid form factor
herck

18 Sep 2015

16:17 Revision 397d5571: Refactoring of Pyramid form factor (2)
herck
13:59 Revision 1f746a39: Generation of projections is refactored
pospelov
12:49 Revision 341221ec: Refactoring of Pyramid form factor
herck

17 Sep 2015

16:25 Revision f1af1762: Histogram2D exposed to Python
pospelov
14:31 Revision b02e086d: Further renaming of OutputData methods
pospelov
09:02 Revision 06b080c6: First implementation of slicing for 2D histograms.
pospelov
08:59 Feature #922 (Sprint): Add slicing to IntensityDataFunctions
pospelov

16 Sep 2015

10:18 Feature #1187 (Rejected): Implement 1D fitting in SpecularSimulation
pospelov
10:15 Feature #1186 (Archived): Implement tiff import/export in kernel
pospelov
08:47 Revision f37929d0: First version of Histogram1D and Histogram2D
pospelov

15 Sep 2015

12:22 Revision 6440dff6: New CumulativeValue class to have on-the-fly average and rms calculations.
pospelov

14 Sep 2015

13:33 Feature #1185 (Rejected): GUI: implement Q-space detector in GUI
pospelov
13:32 Feature #1184 (Archived): Implement transformation to q-space for intensity image

Interesting comment from D. Kumar. They are going to get rid from the real space detector definition (pixel size, d...
pospelov
13:20 Documentation #1183 (Rejected): Drupal: provide labels (NEW, UPDATED) for book pages

We will mark new, updated pages with such labels (as colored, superscript test for example).
pospelov
13:17 Documentation #1182 (Archived): Drupal: provide fitting example with simultaneous fit of two data...
pospelov
13:16 Documentation #1181 (Archived): Drupal: provide fitting example along slices

Special request from Marvin.
pospelov
13:13 Feature #1180 (Archived): GUI: refactor material editor to make select/cancel behavior less confu...

Selection of material, how it is done now, is confusing. Quitting from the editor without changing anything is conf...
pospelov
13:04 Feature #1095 (Sprint): Implement rectangular (real space) detector
pospelov
11:55 Refactoring #619 (Sprint): Masked simulation doesn't use all threads all the time
pospelov
11:52 Feature #842 (Rejected): Provide IntensityData object with helper methods to import user data

This will be done within other items
pospelov
11:45 Feature #1019 (Sprint): Extend GUI ParticleDistribution with linked parameters
pospelov
11:43 Feature #1179 (Archived): GUI: provide export of simulation results into text file (*.int)
pospelov
11:43 Feature #1081 (Sprint): GUI: provide export of simulation results into tiff file
pospelov
11:40 Bug #1083 (Sprint): Trivial MultiLayer samples (no roughness, no particles) cause simulation crash.
pospelov
 

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